Gene prediction software
☆70Oct 22, 2022Updated 3 years ago
Alternatives and similar repositories for SNAP
Users that are interested in SNAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 5 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- Genome Annotation Pipeline☆44Aug 20, 2024Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated 3 weeks ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Mar 14, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome annotation with AUGUSTUS☆330Aug 15, 2025Updated 8 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆120Apr 7, 2021Updated 5 years ago
- source code for EVM☆124Nov 29, 2024Updated last year
- ☆23Mar 12, 2026Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆108Nov 17, 2025Updated 5 months ago
- PASA software☆200Feb 12, 2025Updated last year
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Jan 16, 2024Updated 2 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆458Apr 12, 2026Updated 2 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆84Dec 3, 2025Updated 4 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- Fast genome analysis from unassembled short reads☆318Apr 8, 2024Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Eukaryotic Genome Annotation Pipeline☆386Apr 8, 2026Updated 3 weeks ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 3 weeks ago
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year
- A fork of exonerate: a generic tool for sequence alignment☆71Nov 30, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆120Jul 22, 2025Updated 9 months ago
- ☆22Jan 29, 2024Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- ☆28Apr 21, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Fast genome-wide functional annotation through orthology assignment☆730Mar 24, 2026Updated last month
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 5 months ago
- k-mer based assembly evaluation☆342Jun 28, 2024Updated last year
- TransDecoder source☆304Mar 22, 2026Updated last month
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- NLR-Annotator upload☆76Jul 19, 2023Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆33Sep 11, 2025Updated 7 months ago