KorfLab / SNAPLinks
Gene prediction software
☆67Updated 3 years ago
Alternatives and similar repositories for SNAP
Users that are interested in SNAP are comparing it to the libraries listed below
Sorting:
- ☆45Updated 9 years ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- A organelle de novo genome assembly toolkit☆73Updated 11 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆103Updated 2 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated 3 weeks ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆111Updated last week
- Detecting multi-genome synteny using minimizer graph mapping☆99Updated this week
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆72Updated 4 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- TGS scaffolding☆47Updated 4 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆156Updated 2 months ago
- Synteny Imager☆65Updated last month
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Updated 2 months ago
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Updated 3 weeks ago
- ☆89Updated 2 months ago
- source code for EVM☆122Updated last year
- Annotation helper tool for the manual curation of transposable element consensus sequences☆53Updated 11 months ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated 2 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- ☆78Updated 6 years ago
- Structural Variant Identification Method using Genome Assemblies☆134Updated 3 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Updated 10 months ago
- Neural network classification of TE☆97Updated 3 months ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆47Updated 5 years ago
- PacBio BAM toolkit☆49Updated 11 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year