aweimann / traitarLinks
☆22Updated 2 years ago
Alternatives and similar repositories for traitar
Users that are interested in traitar are comparing it to the libraries listed below
Sorting:
- MAG Circularization Method☆33Updated 3 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 9 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- ☆23Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 4 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 9 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Download assembly files from NCBI☆12Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Strain Resolution ON Graphs☆48Updated last year
- A functional profiler for metagenomes using FracMinHash☆16Updated 5 months ago