aweimann / traitar
☆22Updated 2 years ago
Alternatives and similar repositories for traitar:
Users that are interested in traitar are comparing it to the libraries listed below
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 9 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated 6 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Updated last month
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 7 months ago
- Prediction of microbial interactions in complex communities☆12Updated 8 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 4 months ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆34Updated 6 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Detect contigs of complete circular genomes☆23Updated 5 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated last month
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated last month
- A functional profiler for metagenomes using FracMinHash☆16Updated 2 months ago