aweimann / traitar
☆22Updated last year
Alternatives and similar repositories for traitar:
Users that are interested in traitar are comparing it to the libraries listed below
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 8 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated 6 months ago
- Dadaist2 🟨 Highway to R☆13Updated 2 weeks ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆12Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 7 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated 11 months ago
- ☆17Updated last month
- Automatic eukaryotic taxonomic classification☆28Updated 2 weeks ago
- ☆25Updated last year
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Detect contigs of complete circular genomes☆22Updated 5 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Prediction of microbial interactions in complex communities☆12Updated 7 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆11Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 3 months ago
- A functional profiler for metagenomes using FracMinHash☆16Updated last month
- Tools for analyzing trees☆14Updated last year