☆23Apr 3, 2023Updated 3 years ago
Alternatives and similar repositories for traitar
Users that are interested in traitar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆69Aug 12, 2019Updated 7 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Protein Alignment and Detection Interface☆61Apr 1, 2024Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 6 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated 7 months ago
- IslandPath standalone software☆38Oct 7, 2026Updated 3 weeks ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 7 months ago
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆150Sep 21, 2023Updated 3 years ago
- A pipeline for whole genome assembly☆18Apr 21, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 7 months ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆79Mar 18, 2022Updated 4 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Oct 7, 2026Updated 3 weeks ago
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆20Aug 7, 2026Updated 2 months ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆14Mar 1, 2012Updated 14 years ago
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scripts for estimating bacteria replication rates based on population genome copy number variation☆77Dec 28, 2019Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆29Apr 11, 2018Updated 8 years ago
- Recombination-free trees☆75Jul 24, 2026Updated 3 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆21May 22, 2020Updated 6 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆44Updated this week
- OxyMetaG: Oxygen metabolism profiling from metagenomic data☆14Aug 8, 2026Updated 2 months ago
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- ☆57Sep 17, 2026Updated last month
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- CarveMe: genome-scale metabolic model reconstruction☆224Sep 12, 2025Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago