aweimann / traitar
☆22Updated last year
Alternatives and similar repositories for traitar:
Users that are interested in traitar are comparing it to the libraries listed below
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 6 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated 9 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 5 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- Detect contigs of complete circular genomes☆22Updated 5 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆30Updated 4 months ago
- MAG Circularization Method☆33Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 10 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆12Updated 3 months ago
- De novo VIral Genome Annotator☆21Updated 4 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Bacterial taxonomy construction and evaluation in R☆13Updated 11 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆11Updated 10 months ago
- A functional profiler for metagenomes using FracMinHash☆14Updated last month
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago