Alternatives and similar repositories for tcga_rebuttal

Users that are interested in tcga_rebuttal are comparing it to the libraries listed below

• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• gtonkinhill / TCGA_analysis
  ☆26Updated 2 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated last month
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆24Updated last year
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 10 months ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆17Updated 3 months ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated last month
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆55Updated 3 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆55Updated this week
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated this week
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆28Updated last year
• pachterlab / fastQpick
  ☆27Updated 10 months ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆36Updated 4 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• 123xiaochen / VCFshiny
  ☆29Updated last year
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated 9 months ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆24Updated 4 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 2 months ago
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆35Updated 5 months ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆117Updated 3 weeks ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆21Updated 8 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 5 months ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 4 months ago
• sandberg-lab / Spreading-Correction
  Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
  ☆15Updated 5 years ago