Alternatives and similar repositories for tcga_rebuttal

Users that are interested in tcga_rebuttal are comparing it to the libraries listed below

• gtonkinhill / TCGA_analysis
  ☆27Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated last month
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆16Updated last year
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆27Updated 7 months ago
• tkzeng / GeneBayes
  ☆25Updated last year
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated 2 months ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated last year
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆24Updated 2 years ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 3 weeks ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 7 years ago
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• hoffmangroup / umap
  ☆26Updated 2 months ago
• yge15 / Cancer_Microbiome_Reanalyzed
  supplementary tables and files
  ☆10Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆32Updated 2 years ago
• pachterlab / fastQpick
  ☆26Updated 3 months ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 6 months ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆30Updated last year
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated 4 months ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆25Updated last month
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆8Updated 6 years ago
• andreasmock / MetaboDiff
  ☆30Updated 4 years ago
• NBISweden / workshop-mlbiostatistics
  ☆16Updated this week
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆16Updated 3 years ago