Alternatives and similar repositories for tcga_rebuttal:

Users that are interested in tcga_rebuttal are comparing it to the libraries listed below

• gtonkinhill / TCGA_analysis
  ☆27Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated 4 months ago
• yge15 / Cancer_Microbiome_Reanalyzed
  supplementary tables and files
  ☆10Updated last year
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated 10 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆31Updated 2 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆15Updated last year
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 11 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆46Updated 2 years ago
• sandberg-lab / Spreading-Correction
  Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
  ☆15Updated 4 years ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated last week
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated 2 months ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆25Updated 2 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated 2 months ago
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆26Updated 11 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆26Updated this week
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆36Updated 11 months ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆40Updated 11 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 3 months ago
• 123xiaochen / VCFshiny
  ☆29Updated 5 months ago
• zifanzhu / MicroPro
  A microbial profiling framework for metagenomic analysis
  ☆24Updated 4 years ago
• BenBeresfordJones / MGBC
  The Mouse Gastrointestinal Bacteria Catalogue
  ☆15Updated 2 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆24Updated 10 months ago
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated last year
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 2 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated 2 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆61Updated last week