Alternatives and similar repositories for tcga_rebuttal:

Users that are interested in tcga_rebuttal are comparing it to the libraries listed below

• gtonkinhill / TCGA_analysis
  ☆27Updated last year
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 3 weeks ago
• yge15 / Cancer_Microbiome_Reanalyzed
  supplementary tables and files
  ☆10Updated last year
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆16Updated last year
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 3 weeks ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆25Updated 2 years ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆35Updated 3 weeks ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 7 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated 3 months ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated last year
• NBISweden / workshop-mlbiostatistics
  ☆16Updated 3 weeks ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆31Updated 2 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 2 years ago
• pachterlab / fastQpick
  ☆25Updated 2 months ago
• tkzeng / GeneBayes
  ☆25Updated last year
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆27Updated last year
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆32Updated 2 years ago
• cran / chromoMap
   This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data
  ☆9Updated 3 years ago
• 123xiaochen / VCFshiny
  ☆29Updated 6 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆28Updated this week
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 5 months ago
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆16Updated 3 weeks ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆30Updated last year
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆27Updated 7 months ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last month