Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
☆26Aug 8, 2023Updated 2 years ago
Alternatives and similar repositories for tcga_rebuttal
Users that are interested in tcga_rebuttal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Aug 10, 2023Updated 2 years ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 5 months ago
- Microbial analysis in TCGA data☆94Feb 23, 2024Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last week
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16May 22, 2023Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Feb 9, 2022Updated 4 years ago
- ☆14May 7, 2022Updated 3 years ago
- Pan-cancer mycobiome atlas☆31Oct 7, 2022Updated 3 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆105Updated this week
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15Sep 1, 2025Updated 7 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated last year
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆25Jan 20, 2025Updated last year
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- Microbial marker identification from cross-cohort datasets☆14May 15, 2024Updated last year
- The code for running the analysis component of CSI-Microbe☆12Jan 3, 2024Updated 2 years ago
- Python Primer Design Library☆14Mar 27, 2026Updated last month
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated 2 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- ☆92Sep 3, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- ☆84Sep 13, 2023Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆38Nov 16, 2025Updated 5 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 5 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 10 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 23, 2026Updated last week
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Painting Tools and Dataset☆34Jun 12, 2025Updated 10 months ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- ☆10Nov 24, 2025Updated 5 months ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆14May 18, 2023Updated 2 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 8 months ago
- Find Unique genomic Regions☆32Mar 18, 2026Updated last month
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 5 years ago