gregpoore / tcga_rebuttalLinks
Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
☆26Updated 2 years ago
Alternatives and similar repositories for tcga_rebuttal
Users that are interested in tcga_rebuttal are comparing it to the libraries listed below
Sorting:
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 weeks ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- ☆27Updated 10 months ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- ☆17Updated 4 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 4 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 11 months ago
- ☆26Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆29Updated 6 months ago
- Evolutionary Transcriptomics with R☆48Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- An efficient CLI to extract sequences from the SRA☆118Updated last month
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated last month
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 5 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated 2 weeks ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated 2 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- pathway based data integration and visualization☆43Updated 9 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago