Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
☆27Aug 8, 2023Updated 3 years ago
Alternatives and similar repositories for tcga_rebuttal
Users that are interested in tcga_rebuttal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Aug 10, 2023Updated 3 years ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated 3 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 9 months ago
- Microbial analysis in TCGA data☆94Feb 23, 2024Updated 2 years ago
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆42Feb 9, 2022Updated 4 years ago
- ☆17May 22, 2023Updated 3 years ago
- Pan-cancer mycobiome atlas☆33Oct 7, 2022Updated 3 years ago
- ☆15May 7, 2022Updated 4 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆117Updated this week
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15Updated this week
- DNA/RNA pattern matching algorithm☆21Aug 9, 2025Updated last year
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated 2 years ago
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆25Jan 20, 2025Updated last year
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- ☆93Sep 3, 2024Updated last year
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆19Feb 3, 2023Updated 3 years ago
- Python Primer Design Library☆15Mar 27, 2026Updated 4 months ago
- ☆11Mar 10, 2024Updated 2 years ago
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- Fast DNA search and [host] depletion using minimizers☆120Updated this week
- ☆85Sep 13, 2023Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 2 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An efficient CLI to extract sequences from the SRA☆124Jun 12, 2026Updated last month
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆26Mar 25, 2023Updated 3 years ago
- ☆11Nov 24, 2025Updated 8 months ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated last month
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated last year
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 4 years ago