gregpoore / tcga_rebuttal
Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
☆26Updated last year
Alternatives and similar repositories for tcga_rebuttal:
Users that are interested in tcga_rebuttal are comparing it to the libraries listed below
- A shiny package for microbiome functional enrichment analysis☆38Updated 4 months ago
- ☆27Updated last year
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated this week
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- supplementary tables and files☆10Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- ☆24Updated 11 months ago
- Time-Course Multi-Omics data integration☆24Updated 11 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 10 months ago
- ☆29Updated 4 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- ☆15Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- ☆26Updated last week
- Ultra-fast 5' and 3' demultiplexer☆26Updated 10 months ago
- ☆30Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Fast FASTQ sample demultiplexing in Rust.☆61Updated this week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆24Updated this week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 2 months ago
- ☆26Updated 4 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- gutSMASH☆53Updated 2 months ago
- pathway based data integration and visualization☆40Updated 11 months ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago