GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser
☆12Oct 5, 2025Updated 9 months ago
Alternatives and similar repositories for graphsnp
Users that are interested in graphsnp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- ☆40Apr 9, 2026Updated 3 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 2 months ago
- A tool to easily create informative genomic feature plots☆17Dec 26, 2022Updated 3 years ago
- Visualize microbial evolution at the SNP level!☆16Aug 12, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- WhatsGNU: a tool for identifying proteomic novelty☆16Jan 27, 2025Updated last year
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆110Updated this week
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆220Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated last week
- Repo for Proksee Cmd Line Tools☆29Feb 22, 2023Updated 3 years ago
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated 11 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆40Mar 7, 2025Updated last year
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- A DIY Guide To BLAST Tools For Sequence Alignment☆17Aug 9, 2024Updated last year
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated last month
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 5 years ago
- Antibiotic resistance prediction in minutes☆119Mar 27, 2026Updated 3 months ago
- ☆13Aug 15, 2025Updated 11 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆128Oct 30, 2023Updated 2 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Download all EpiCoV sequcnes from GISAID☆32Jun 21, 2022Updated 4 years ago
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆50Feb 20, 2026Updated 5 months ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- A model-agnostic MCP Client-Server for .Net and Unity☆16Apr 6, 2025Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 5 months ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 6 months ago
- Code for nanopore paper☆33Jun 26, 2015Updated 11 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago