biocore / tcgaLinks
Microbial analysis in TCGA data
☆91Updated last year
Alternatives and similar repositories for tcga
Users that are interested in tcga are comparing it to the libraries listed below
Sorting:
- RNA-Seq analysis workflow☆104Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 6 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆72Updated this week
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 6 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- ☆84Updated 11 months ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 8 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated last month
- microRNA profiling pipeline☆79Updated 3 years ago
- A list of alternative splicing analysis resources☆46Updated 5 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆48Updated 2 years ago
- ☆58Updated last month
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.☆15Updated 11 months ago
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆41Updated last year
- circular RNA analysis toolset☆85Updated 11 months ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆81Updated this week
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆57Updated last month
- ☆46Updated 5 years ago
- ☆74Updated 4 years ago
- My youtube programming scripts☆57Updated 7 months ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆30Updated 2 weeks ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆153Updated last year
- ☆61Updated 5 years ago