biocore / tcgaLinks
Microbial analysis in TCGA data
☆91Updated last year
Alternatives and similar repositories for tcga
Users that are interested in tcga are comparing it to the libraries listed below
Sorting:
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆71Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- ☆82Updated 10 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆112Updated 2 weeks ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆138Updated 10 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- ☆73Updated 4 years ago
- ☆57Updated 4 years ago
- microRNA profiling pipeline☆78Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- release version☆54Updated 2 years ago
- ☆58Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- A small-RNA sequencing analysis pipeline☆87Updated last month
- My youtube programming scripts☆54Updated 6 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆151Updated 10 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated last week
- Basic workflow for ATAC-seq analysis☆81Updated last year
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year