Alternatives and similar repositories for mycobiome

Users that are interested in mycobiome are comparing it to the libraries listed below

• sjdlabgroup / SAHMI
  ☆85Updated last year
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆28Updated 4 years ago
• ruppinlab / CSI-Microbes-identification
  Code for the identification step for CSI-Microbes
  ☆31Updated 11 months ago
• ruppinlab / tcga-microbiome-prediction
  Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…
  ☆18Updated 11 months ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆74Updated 6 months ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆18Updated last year
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆38Updated last year
• Zaoqu-Liu / BioEnricher
  Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer
  ☆81Updated last year
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆18Updated 2 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆17Updated last year
• Asa12138 / ReporterScore
  Generalized Reporter Score-based Functional Enrichment Method for Omics Data
  ☆78Updated 4 months ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆60Updated 2 years ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆60Updated 4 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆65Updated last year
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆32Updated 3 years ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆56Updated last year
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆55Updated last year
• sjczheng / EpiDISH
  This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…
  ☆54Updated 3 months ago
• liulab-dfci / RIMA_pipeline
  ☆87Updated 2 months ago
• prabhakarlab / DUBStepR
  Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data
  ☆19Updated 3 years ago
• jokergoo / GSEAtopics
  ☆24Updated 5 months ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• Moonerss / CIBERSORT
  ☆41Updated last year
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆38Updated 5 years ago
• kevlitchfield1 / CPI1000_paper
  ☆20Updated 4 years ago
• ebecht / MCPcounter
  ☆59Updated 3 years ago
• MGI-tech-bioinformatics / DNBelab_C_Series_scRNA-analysis-software
  An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
  ☆35Updated 2 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 10 months ago
• TheHumphreysLab / plot1cell
  ☆115Updated 2 months ago