Alternatives and similar repositories for mycobiome

Users that are interested in mycobiome are comparing it to the libraries listed below

• sjdlabgroup / SAHMI
  ☆80Updated 8 months ago
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆37Updated last year
• ruppinlab / CSI-Microbes-identification
  Code for the identification step for CSI-Microbes
  ☆28Updated 5 months ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆44Updated 4 years ago
• liulab-dfci / RIMA_pipeline
  ☆80Updated last year
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• IzarLab / CUIMC-NYP_COVID_autopsy_lung
  ☆42Updated 4 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆109Updated 9 months ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆47Updated 9 months ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆58Updated 4 years ago
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆31Updated 9 months ago
• TheHumphreysLab / plot1cell
  ☆106Updated 2 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆57Updated 6 months ago
• rpolicastro / scProportionTest
  ☆64Updated last year
• hamidghaedi / Methylation_Analysis
  Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis
  ☆27Updated last year
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆59Updated last year
• ruppinlab / CSI-Microbes-analysis
  The code for running the analysis component of CSI-Microbe
  ☆12Updated last year
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆27Updated last year
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆66Updated last year
• youqiongye / HAMFA
  Hypoxia associated molecular feature analysis
  ☆35Updated 5 years ago
• twbattaglia / tumor-microbiome
  A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)
  ☆13Updated last year
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆34Updated 4 years ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆29Updated 4 years ago
• junjunlab / RiboProfiler
  Integrating Ribo-SEQ Upstream and Downstream Analysis
  ☆11Updated 7 months ago
• broadinstitute / gistic2
  Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
  ☆51Updated 3 years ago
• PierreBSC / Viral-Track
  ☆57Updated 4 years ago
• junjunlab / transPlotR
  An elegant package to visualize gene structures
  ☆76Updated 2 years ago