Pan-cancer mycobiome atlas
☆32Oct 7, 2022Updated 3 years ago
Alternatives and similar repositories for mycobiome
Users that are interested in mycobiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆92Sep 3, 2024Updated last year
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆15Nov 26, 2023Updated 2 years ago
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.☆25Dec 17, 2024Updated last year
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- Microbial analysis in TCGA data☆94Feb 23, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated 11 months ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 2 years ago
- Pseudotime Analysis for Bulk Data☆19Aug 2, 2024Updated last year
- ☆12May 24, 2024Updated 2 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆31Sep 15, 2023Updated 2 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆19Mar 26, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆32Jan 4, 2025Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- R package for analysing single cell data☆64Dec 8, 2022Updated 3 years ago
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jun 9, 2026Updated last week
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated 3 months ago
- ☆14May 7, 2022Updated 4 years ago
- ☆26Oct 9, 2020Updated 5 years ago
- 现代应用统计 Modern Applied Statistics with R, INLA and Stan☆26May 12, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Dec 4, 2023Updated 2 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆25Jan 20, 2025Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆20Jan 8, 2024Updated 2 years ago
- Microbial marker identification from cross-cohort datasets☆15May 15, 2024Updated 2 years ago
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- ☆22Mar 6, 2023Updated 3 years ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆14Apr 9, 2024Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated last year
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 4 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆290Updated this week