Pan-cancer mycobiome atlas
☆33Oct 7, 2022Updated 3 years ago
Alternatives and similar repositories for mycobiome
Users that are interested in mycobiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆93Sep 3, 2024Updated last year
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆15Nov 26, 2023Updated 2 years ago
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- Microbial analysis in TCGA data☆94Feb 23, 2024Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated last year
- Pseudotime Analysis for Bulk Data☆19Aug 2, 2024Updated 2 years ago
- ☆12May 24, 2024Updated 2 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆32Sep 15, 2023Updated 2 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated 2 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- R package for analysing single cell data☆67Dec 8, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Jul 31, 2026Updated last month
- ☆15May 7, 2022Updated 4 years ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆37Mar 5, 2026Updated 5 months ago
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆17Nov 24, 2025Updated 9 months ago
- ☆26Oct 9, 2020Updated 5 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆19Aug 17, 2026Updated last week
- ☆33Jan 4, 2025Updated last year
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆26Jan 20, 2025Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆20Aug 3, 2026Updated 3 weeks ago
- ☆22Mar 6, 2023Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 6 years ago
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- Python package to interactively annotate histological images within a jupyter notebook☆19Oct 20, 2025Updated 10 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- Professional Comprehensive Omics Data Analysis☆31Apr 3, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆22Updated this week
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated last year
- 现代应用统计 Modern Applied Statistics with R, INLA and Stan☆26May 12, 2026Updated 3 months ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 4 years ago