Pan-cancer mycobiome atlas
☆31Oct 7, 2022Updated 3 years ago
Alternatives and similar repositories for mycobiome
Users that are interested in mycobiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆90Sep 3, 2024Updated last year
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.☆25Dec 17, 2024Updated last year
- Microbial analysis in TCGA data☆94Feb 23, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Jul 15, 2025Updated 8 months ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Aug 8, 2023Updated 2 years ago
- ☆11May 24, 2024Updated last year
- Pseudotime Analysis for Bulk Data☆19Aug 2, 2024Updated last year
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆31Sep 15, 2023Updated 2 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆17Mar 26, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆32Jan 4, 2025Updated last year
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- R package for analysing single cell data☆63Dec 8, 2022Updated 3 years ago
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆12Apr 13, 2024Updated last year
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆36Mar 5, 2026Updated 3 weeks ago
- ☆14May 7, 2022Updated 3 years ago
- ☆25Oct 9, 2020Updated 5 years ago
- 现代应用统计 Modern Applied Statistics with R, INLA and Stan☆25Jan 27, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆12Dec 4, 2023Updated 2 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆25Jan 20, 2025Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆20Jan 8, 2024Updated 2 years ago
- Microbial marker identification from cross-cohort datasets☆14May 15, 2024Updated last year
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- The code for running the analysis component of CSI-Microbe☆12Jan 3, 2024Updated 2 years ago
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tutorial for Metagenome-Atlas☆23Nov 24, 2023Updated 2 years ago
- ☆22Mar 6, 2023Updated 3 years ago
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆14Apr 9, 2024Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated 11 months ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆10Oct 5, 2021Updated 4 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆283Mar 22, 2026Updated last week