Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature Communications (2024).
☆27Jan 20, 2025Updated last year
Alternatives and similar repositories for GMWI2
Users that are interested in GMWI2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic Estimation of Dietary Intake and Content.☆48Aug 5, 2026Updated 3 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆16May 24, 2023Updated 3 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆39Sep 23, 2020Updated 6 years ago
- ☆18Feb 3, 2023Updated 3 years ago
- kmer-based software for detecting bacterial strain genomes inside metagenomes☆12Dec 11, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- Modeling strain-level variation by gene, phylogeny, or pathway☆14Aug 6, 2026Updated 2 months ago
- R package to predict microbial loads☆21Updated this week
- NIPT-human-genetics is a semi-automated workflow designed for the analysis of large-scale ultra-low-pass non-invasive prenatal test (NIPT…☆15May 30, 2026Updated 5 months ago
- Parser and annotation tools using the FAPROTAX database (Louca S. et al., 2016)☆13Apr 8, 2022Updated 4 years ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated last year
- Metagenome read simulation of multiple synthetic communities☆10Jan 6, 2024Updated 2 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated last year
- Workflow for functional annotation of a set of bacterial genomes☆11Nov 8, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆16Dec 2, 2022Updated 3 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Pipelines used in the lab.☆16Mar 26, 2025Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- ☆37Aug 7, 2025Updated last year
- consensus approach for community profiling with nanopore amplicon sequencing data☆18Sep 30, 2024Updated 2 years ago
- Recording personal workflows used in work, study notes, and summaries of various tools and methods.☆11Oct 9, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Magic gene-neighborhood analyses☆15Oct 6, 2026Updated last month
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15Aug 20, 2026Updated 2 months ago
- Interface to Popular Multiple Sequence Alignment Tools - R-package☆12Sep 6, 2024Updated 2 years ago
- ☆86Oct 16, 2024Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 3 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆40Aug 21, 2026Updated 2 months ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆17Sep 25, 2024Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 3 years ago
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆24Oct 28, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Apr 3, 2025Updated last year
- This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming languag…☆12Aug 9, 2021Updated 5 years ago
- ☆33Oct 1, 2026Updated last month
- ☆26Apr 20, 2023Updated 3 years ago
- bioBakery tools for meta'omic profiling☆328Updated this week
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆64Jan 26, 2026Updated 9 months ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆19Mar 3, 2025Updated last year