Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature Communications (2024).
☆25Jan 20, 2025Updated last year
Alternatives and similar repositories for GMWI2
Users that are interested in GMWI2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆37Sep 23, 2020Updated 5 years ago
- R package to predict microbial loads☆17Updated this week
- Metagenomic Estimation of Dietary Intake and Content.☆40Jan 29, 2026Updated 2 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 4 months ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆17Mar 3, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Dec 2, 2022Updated 3 years ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆14Sep 1, 2025Updated 6 months ago
- ☆12Apr 3, 2025Updated 11 months ago
- ☆32Jan 4, 2025Updated last year
- ☆78Oct 16, 2024Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 2 months ago
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆18Mar 20, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Jun 24, 2021Updated 4 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Aug 8, 2023Updated 2 years ago
- This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming languag…☆11Aug 9, 2021Updated 4 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 5 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- ☆12Feb 26, 2019Updated 7 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 9 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Markdown version of Cytoscape manual☆12Sep 27, 2025Updated 6 months ago
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 2 years ago
- ☆23Feb 7, 2022Updated 4 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- ☆16Nov 16, 2023Updated 2 years ago
- MetaCompare☆19Mar 3, 2024Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆35Nov 16, 2025Updated 4 months ago
- ☆15Jun 26, 2025Updated 9 months ago
- ☆13Jul 4, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated last month
- bioBakery tools for meta'omic profiling☆309Jun 3, 2025Updated 9 months ago
- Pan-cancer mycobiome atlas☆31Oct 7, 2022Updated 3 years ago
- A context aware tool for proteasomal cleavage predictions☆15May 30, 2025Updated 9 months ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- ☆10Mar 24, 2025Updated last year