Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature Communications (2024).
☆25Jan 20, 2025Updated last year
Alternatives and similar repositories for GMWI2
Users that are interested in GMWI2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆37Sep 23, 2020Updated 5 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆45Jan 29, 2026Updated 5 months ago
- ☆19Feb 3, 2023Updated 3 years ago
- R package to predict microbial loads☆19Updated this week
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆16Dec 2, 2022Updated 3 years ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15Jun 17, 2026Updated last month
- ☆14Apr 3, 2025Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- ☆81Oct 16, 2024Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆37Jul 18, 2026Updated last week
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆24Jul 10, 2026Updated 2 weeks ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- ☆11Mar 10, 2024Updated 2 years ago
- This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming languag…☆12Aug 9, 2021Updated 4 years ago
- ☆12Feb 26, 2019Updated 7 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated 9 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆37Jun 24, 2021Updated 5 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆59Jan 26, 2026Updated 6 months ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆19Mar 3, 2025Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆21Nov 24, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- ☆33Jan 4, 2025Updated last year
- MetaCompare☆20Mar 3, 2024Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Pan-cancer mycobiome atlas☆33Oct 7, 2022Updated 3 years ago
- ☆24Feb 7, 2022Updated 4 years ago
- Markdown version of Cytoscape manual☆12Sep 27, 2025Updated 10 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Download assembly files from NCBI☆13May 9, 2023Updated 3 years ago
- ☆15Jun 26, 2025Updated last year
- ☆13Jul 4, 2023Updated 3 years ago
- Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.☆19Feb 2, 2026Updated 5 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 5 months ago
- bioBakery tools for meta'omic profiling☆322Jul 17, 2026Updated last week
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago