rrwick / BacsortLinks
a collection of scripts for organising bacterial genomes by species
☆80Updated 3 years ago
Alternatives and similar repositories for Bacsort
Users that are interested in Bacsort are comparing it to the libraries listed below
Sorting:
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Estimate metagenomic coverage and sequence diversity☆54Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- ☆84Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- IS mapping software☆56Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 2 months ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated this week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 5 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 7 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated this week
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Reorients assembled microbial sequences☆128Updated last month
- all methods related to Enterobase☆43Updated last year
- Prediction of prophages from bacterial genomes☆81Updated 3 months ago
- Recombination-free trees☆60Updated last month
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆37Updated 3 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Split k-mer analysis – version 2☆92Updated 2 months ago
- Graph-based assembly phasing☆87Updated 5 months ago