mikemc / differential-abundance-theoryLinks
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
☆12Updated 2 years ago
Alternatives and similar repositories for differential-abundance-theory
Users that are interested in differential-abundance-theory are comparing it to the libraries listed below
Sorting:
- Metagenomics calibration R package☆20Updated 3 years ago
- ☆28Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 5 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- ☆19Updated 2 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- An Amazing Shiny App☆17Updated 4 years ago
- Simple R utilities for working with HMMER☆20Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Phylogenetic Isometric Log Ratio☆19Updated last year
- STAMPS 2018 course☆15Updated 7 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- ☆20Updated 2 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆20Updated last week
- Linear Decomposition Model☆25Updated 2 years ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆10Updated 3 years ago
- Microbial community analysis tools in R☆22Updated 3 years ago
- R Interfaces to Phylogenetic Software☆12Updated last month
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- Species richness with high diversity☆67Updated 2 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- A Toolbox for Manipulating Biological Sequences in R☆26Updated last month
- Seamless Integration of BLAST Sequence Searches in R☆30Updated 2 years ago
- A model-based visualization method for microbiome data☆16Updated this week