A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
☆12Oct 30, 2023Updated 2 years ago
Alternatives and similar repositories for differential-abundance-theory
Users that are interested in differential-abundance-theory are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Oct 3, 2023Updated 2 years ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆26Apr 17, 2025Updated last year
- ☆19Mar 8, 2026Updated 3 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆62Nov 3, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Dec 2, 2024Updated last year
- ☆28Feb 27, 2024Updated 2 years ago
- Multinomial Logistic-Normal Models (really fast)☆20May 22, 2026Updated 3 weeks ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- BLAST-like algorithm for R based on the nsearch library (https://github.com/stevschmid/nsearch)☆14Apr 24, 2026Updated last month
- ☆19May 4, 2023Updated 3 years ago
- Miscellaneous functions for metagenomic analysis.☆54May 14, 2026Updated last month
- Phylogenetic Isometric Log Ratio☆19Apr 1, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Jun 11, 2026Updated last week
- Talk to the NCBI EUtils☆23Oct 8, 2020Updated 5 years ago
- Stray has been renamed fido, development continues at jsilve24/fido☆23Jan 26, 2022Updated 4 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 7 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated this week
- Look Up Guild Information for Fungi in R☆24Mar 20, 2025Updated last year
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆16Dec 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Jun 8, 2020Updated 6 years ago
- Biology 202 Course Website☆18Oct 1, 2020Updated 5 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- ☆12Oct 19, 2024Updated last year
- mvabund updates☆10Mar 10, 2024Updated 2 years ago
- ☆13Jul 6, 2022Updated 3 years ago
- Simplex space operations for compositional data implemented in Python.☆13Feb 17, 2022Updated 4 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Snakemake based framework for NGS data analysis and management☆12May 12, 2024Updated 2 years ago
- creating hybrid-gene phylogenetic trees for diversity analyses☆30Aug 23, 2022Updated 3 years ago
- Analysing and Modelling Leaf Gas Exchange Data in R☆18Nov 29, 2025Updated 6 months ago
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Dec 30, 2019Updated 6 years ago
- Drawing 'dendrogram' using 'ggtree'☆13Apr 29, 2026Updated last month
- Material-UI port of react-jsonschema-form☆19Aug 13, 2019Updated 6 years ago
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆11Apr 3, 2026Updated 2 months ago