mikemc / differential-abundance-theory
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
☆12Updated last year
Alternatives and similar repositories for differential-abundance-theory:
Users that are interested in differential-abundance-theory are comparing it to the libraries listed below
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 9 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 5 years ago
- Metagenomics calibration R package☆18Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 2 weeks ago
- ☆26Updated 11 months ago
- ☆19Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated last year
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated 2 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆12Updated 2 weeks ago
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 6 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 8 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Non parametric differential abundance tests for microbiome data☆9Updated 3 years ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆14Updated 7 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- R package for microbial pangenomics☆21Updated 2 years ago
- Informatic Sequence Classification Trees☆14Updated 3 years ago
- STAMPS 2018 course☆16Updated 6 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 weeks ago
- An Amazing Shiny App☆17Updated 3 years ago
- tidyMicro GitHup Repository☆18Updated 3 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- A DRAFT, early stage book on snakemake.☆18Updated last year
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆9Updated 3 years ago
- Linear Decomposition Model☆24Updated last year
- Fast alignment-free pangenome creation and exploration☆27Updated 4 years ago
- ☆13Updated 2 months ago