mikemc / differential-abundance-theoryLinks
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
☆12Updated last year
Alternatives and similar repositories for differential-abundance-theory
Users that are interested in differential-abundance-theory are comparing it to the libraries listed below
Sorting:
- Metagenomics calibration R package☆20Updated 3 years ago
- ☆27Updated last year
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 4 months ago
- Simple R utilities for working with HMMER☆20Updated 11 months ago
- ☆19Updated 2 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated last month
- Phylogenetic Isometric Log Ratio☆19Updated 11 months ago
- A Toolbox for Manipulating Biological Sequences in R☆23Updated 3 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- An Amazing Shiny App☆17Updated 4 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- ☆21Updated last year
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- Microbial community analysis tools in R☆22Updated 3 years ago
- Seamless Integration of BLAST Sequence Searches in R☆30Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Computes affinity between two entities based on their co-occurrence☆27Updated 2 months ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆19Updated this week
- R We There Yet?☆31Updated 5 months ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- babette is an R package to work with BEAST2☆46Updated 3 weeks ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆48Updated 3 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Calculate distances between phylogenetic trees in R☆33Updated this week
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last month
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆68Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- A textbook for phylogenetic comparative methods.☆44Updated 5 years ago
- R Interfaces to Phylogenetic Software☆12Updated this week