FredHutch / FAMLILinks
Functional Analysis of Metagenomes by Likelihood Inference
☆17Updated last month
Alternatives and similar repositories for FAMLI
Users that are interested in FAMLI are comparing it to the libraries listed below
Sorting:
- MAG Circularization Method☆32Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- ☆23Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- strain-level analysis tools☆39Updated 11 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 2 weeks ago
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 3 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- map Illumina metagenomes to genomes!☆38Updated last month
- Discover and annotate the virome☆53Updated this week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- GTDB => NCBI☆15Updated 10 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 2 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 6 months ago