guyleonard / get_jgi_genomesLinks
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
☆38Updated 4 months ago
Alternatives and similar repositories for get_jgi_genomes
Users that are interested in get_jgi_genomes are comparing it to the libraries listed below
Sorting:
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 7 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆87Updated 2 months ago
- Software for predicting translation initiation rates in bacteria☆29Updated 2 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆32Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- Logan Unitigs and Contigs☆174Updated last month
- Discovery of conserved gene clusters in multiple genomes☆110Updated 5 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆67Updated 3 weeks ago
- MGnify genome analysis pipeline☆108Updated 2 weeks ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated last month
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆36Updated last week
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆22Updated 7 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- ☆31Updated 10 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆35Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆28Updated last week
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆153Updated this week
- ☆132Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆102Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- ORFFinder in Python☆15Updated last year
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆58Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆115Updated 11 months ago