Alternatives and similar repositories for get_jgi_genomes

Users that are interested in get_jgi_genomes are comparing it to the libraries listed below

• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆88Updated 3 months ago
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆116Updated 6 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆58Updated 7 months ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆109Updated this week
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆161Updated last year
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆51Updated 2 years ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆23Updated 3 years ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆176Updated 2 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆29Updated 7 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆116Updated last year
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆157Updated 3 weeks ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆69Updated last month
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆15Updated 5 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆60Updated last year
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 2 months ago
• KatyBrown / CIAlign
  ☆132Updated last year
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆77Updated 4 months ago
• EnzoAndree / HmmPy
  A Pure-Python parser of HMMER3 output
  ☆18Updated last year
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆36Updated last year
• BackofenLab / CRISPRidentify
  ☆31Updated 10 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 2 months ago
• JoanaMPereira / GCsnap
  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
  ☆33Updated last year
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆102Updated last year
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆36Updated last month
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆26Updated 2 weeks ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated last month