Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark
☆15Mar 28, 2019Updated 7 years ago
Alternatives and similar repositories for single-cell-experiments
Users that are interested in single-cell-experiments are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)☆14Aug 31, 2016Updated 9 years ago
- Bioinformatics Ketrew Pipelines☆28Nov 14, 2021Updated 4 years ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 5 years ago
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆17Dec 7, 2023Updated 2 years ago
- Bioinformatics pipelines for Resolwe☆19Mar 24, 2026Updated 2 months ago
- A new extended cell deconvolution for peripheral blood☆19Feb 28, 2025Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- A repository housing metadata and data files (or links to data files) that are being prepared as sample data bundles for various uses.☆13Feb 12, 2022Updated 4 years ago
- A python package for performing single NMF and joint NMF algorithms☆14Aug 14, 2023Updated 2 years ago
- Run TFLITE models on the web☆13Jan 2, 2022Updated 4 years ago
- ☆19Mar 12, 2024Updated 2 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆59Apr 28, 2020Updated 6 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Source code of the paper "DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations"☆13Sep 7, 2017Updated 8 years ago
- ☆67Aug 2, 2019Updated 6 years ago
- Frontend for CRM (MIT)☆14Jul 6, 2015Updated 10 years ago
- ☆19Jun 5, 2024Updated 2 years ago
- ☆28Jul 6, 2016Updated 9 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆15Nov 26, 2023Updated 2 years ago
- Visualization of scRNA-seq data.☆99Nov 10, 2022Updated 3 years ago
- Trigram tokenizer module for SQLite FTS5☆14Feb 22, 2021Updated 5 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆25Aug 15, 2023Updated 2 years ago
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆21Jul 13, 2021Updated 4 years ago
- ggplot2 geoms to outline groups of data points☆16Nov 24, 2023Updated 2 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Feb 27, 2020Updated 6 years ago
- TCGA Splicing Variation Database Cancer Splicing Variant Database Cancer alternative splicing database☆13Jun 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆13Nov 24, 2018Updated 7 years ago
- Image Annotator Web-app using Plotly-Dash, MongoDB, and MLflow☆13Nov 22, 2022Updated 3 years ago
- JSON processing command line tool based on JSONSelect (CSS-like selectors for JSON)☆43Sep 28, 2015Updated 10 years ago
- Generate conda environment.yml from PEP 621 and/or flit config.☆11Sep 2, 2021Updated 4 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Tool to compute bond and angle force field parameters with the Seminario method☆14Apr 15, 2018Updated 8 years ago