lasersonlab / single-cell-experimentsLinks
Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark
☆14Updated 6 years ago
Alternatives and similar repositories for single-cell-experiments
Users that are interested in single-cell-experiments are comparing it to the libraries listed below
Sorting:
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- ☆10Updated 8 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆79Updated 5 months ago
- A performant scientific image visualization system.☆36Updated last week
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 7 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆63Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 5 months ago
- Code and documentation for the curation of cellxgene datasets☆50Updated this week
- Use cases for anndata.☆14Updated 6 months ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Spatial omics analysis and visualization library☆21Updated this week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Multi-omics factor analysis v2☆54Updated last month
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Updated 2 months ago
- Multi-omics studies are available here☆52Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆23Updated 3 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Updated 6 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- ☆13Updated 7 months ago
- ☆22Updated 5 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated last week
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- ☆19Updated 6 years ago