RGLab / ImmuneSpaceR
An R Interface to the ImmuneSpace database portal
☆24Updated last year
Alternatives and similar repositories for ImmuneSpaceR:
Users that are interested in ImmuneSpaceR are comparing it to the libraries listed below
- Bioconductor package for management of multi-assay data☆71Updated last month
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 4 months ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 3 months ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆36Updated 2 years ago
- My notes/usage examples for various Bioconductor packages☆15Updated 8 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated 11 months ago
- DESeq2 or edgeR☆22Updated 8 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Explore design matrices interactively with R/Shiny☆37Updated 3 months ago
- Reproducible workflows for the data analysis of "Baseline" project☆9Updated 5 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆43Updated 3 months ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆90Updated 4 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 months ago
- R package for querying the OMIM database☆15Updated 3 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- Template for building a bioconductor workshop package using github actions☆20Updated 8 months ago
- Save and load your R sessions faster using parallel compression☆25Updated 6 years ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Updated 3 weeks ago
- Reactome Pathway Analysis☆40Updated 5 months ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 2 months ago
- Statistical power studies for multi-omics experiments.☆31Updated 2 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated 4 months ago