crazyhottommy / pyflow-ChIPseqLinks
a snakemake pipeline to process ChIP-seq files from GEO or in-house
☆110Updated 5 years ago
Alternatives and similar repositories for pyflow-ChIPseq
Users that are interested in pyflow-ChIPseq are comparing it to the libraries listed below
Sorting:
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆117Updated 2 years ago
- ☆120Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ☆157Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆155Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last month
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Detecting sites of genomic enrichment☆196Updated 2 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆156Updated this week
- Check strandedness of RNA-Seq fastq files☆127Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆131Updated last year
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆133Updated last year
- ASCAT R package☆191Updated 2 months ago
- deconstructSigs☆143Updated 2 years ago
- microRNA profiling pipeline☆78Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- Publication quality NGS track plotting☆115Updated last month
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- ☆90Updated 4 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago