waldronlab / curatedTCGADataLinks
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
☆43Updated 3 months ago
Alternatives and similar repositories for curatedTCGAData
Users that are interested in curatedTCGAData are comparing it to the libraries listed below
Sorting:
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 10 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 5 months ago
- Bioconductor package for management of multi-assay data☆72Updated 2 months ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 3 months ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 3 weeks ago
- Glimma R package☆50Updated last year
- Toolbox package for organizing and working with TCGA data☆28Updated 3 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 3 months ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- An introduction to matrix factorization and PCA and SVD.☆41Updated 2 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 4 years ago
- Template for building a bioconductor workshop package using github actions☆21Updated 4 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 6 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 3 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Updated 4 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 11 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 weeks ago
- Explore design matrices interactively with R/Shiny☆37Updated 3 weeks ago