shion-h / UmibatoLinks
Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn
☆10Updated 4 years ago
Alternatives and similar repositories for Umibato
Users that are interested in Umibato are comparing it to the libraries listed below
Sorting:
- ☆21Updated 4 months ago
- metabolic heatmap☆20Updated 6 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆22Updated 2 weeks ago
- This is a repository for CAMPER.☆14Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- ☆12Updated last month
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- ☆19Updated 2 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- HMmer Based UndeRstandinG of gene clustERs☆14Updated last week
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆41Updated 5 months ago
- ☆18Updated 4 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated 2 years ago
- ☆15Updated 2 years ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆9Updated 3 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated this week
- Phage-Host Interaction Search Tool☆27Updated 11 months ago
- ☆38Updated 2 weeks ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆18Updated 7 months ago
- R package for microbial pangenomics☆23Updated 3 years ago
- gutSMASH☆53Updated 5 months ago