shion-h / UmibatoLinks
Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn
☆10Updated 4 years ago
Alternatives and similar repositories for Umibato
Users that are interested in Umibato are comparing it to the libraries listed below
Sorting:
- metabolic heatmap☆21Updated 6 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆23Updated 4 months ago
- ☆13Updated 3 weeks ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆12Updated last year
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 2 years ago
- ☆19Updated 2 years ago
- ☆45Updated 2 years ago
- ☆27Updated 8 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- ☆37Updated last year
- gutSMASH☆55Updated 9 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- ☆41Updated 3 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Updated last year
- ☆12Updated 4 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆47Updated 9 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 5 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Updated last year
- ☆31Updated 3 years ago
- ☆31Updated 9 months ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆27Updated 8 months ago
- Plot microbiome time series in parallel☆26Updated last year