Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn
☆10Apr 22, 2021Updated 5 years ago
Alternatives and similar repositories for Umibato
Users that are interested in Umibato are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆36Jan 21, 2026Updated 6 months ago
- ☆13Dec 2, 2024Updated last year
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Aug 24, 2021Updated 4 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Aug 12, 2022Updated 4 years ago
- ☆18Nov 19, 2024Updated last year
- This project proposes an algorithm named k-CMM for Clustering Mixed Numeric and Categorical Data with Missing Values☆15Jul 9, 2021Updated 5 years ago
- Easy computation of Marketing Metrics in R☆28Aug 14, 2019Updated 7 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- A flexible training-free diffusion-based method for generating tileable image sets, including self-tiling images, stochastic self-tiling …☆23May 26, 2025Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bayesian mixture models for estimating and clustering cancer cell fractions☆26Dec 20, 2022Updated 3 years ago
- agent based modelling☆39Aug 28, 2024Updated last year
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆12Mar 25, 2026Updated 4 months ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago
- ☆10Oct 17, 2019Updated 6 years ago
- primer R package for "A Primer of Ecology with R"☆15May 16, 2026Updated 3 months ago
- Zero-Inflated Beta Random Effect model☆31Mar 6, 2026Updated 5 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆37Dec 6, 2023Updated 2 years ago
- HTML Table with Group By functionality Implemented using Facebook react.js☆10Aug 1, 2016Updated 10 years ago
- MAGScoT - a MAG scoring and refinement tool☆48Apr 8, 2026Updated 4 months ago
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆37Sep 23, 2020Updated 5 years ago
- GTS: Genome Transformation Subprograms☆15Feb 25, 2023Updated 3 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 8 months ago
- ☆13Apr 5, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Jun 25, 2025Updated last year
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- Supporting material for "Processing and visualization of metabolomics data using R"☆20Jan 3, 2017Updated 9 years ago
- Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.☆13Aug 7, 2025Updated last year
- Dockerfile☆10Feb 5, 2024Updated 2 years ago
- ggplots for nested data☆10Jul 17, 2024Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆61Apr 18, 2021Updated 5 years ago