Alternatives and similar repositories for SparseDOSSA2

Users that are interested in SparseDOSSA2 are comparing it to the libraries listed below

• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated last month
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated 2 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 3 weeks ago
• statdivlab / stamps2019
  statdivlab's teaching materials for STAMPS @ the MBL in 2019
  ☆12Updated 5 years ago
• statdivlab / tinyvamp
  ☆19Updated last year
• mblstamps / stamps2018
  STAMPS 2018 course
  ☆16Updated 6 years ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated last week
• vdblab / FLORAL
  Fit LOg-RAtio Lasso regression for compositional covariates
  ☆13Updated 2 months ago
• lch14forever / beem-static
  📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
  ☆9Updated 3 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆37Updated 9 years ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• aghozlane / shaman
  SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…
  ☆13Updated 4 months ago
• reptalex / phylofactor
  ☆27Updated last year
• knights-lab / dietstudy_analyses
  ☆11Updated 6 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• ggloor / CoDa_microbiome_tutorial
  Workshop for NGS'18 conference, Barcelona 2018
  ☆24Updated 6 years ago
• lakarstens / ControllingContaminants16S
  ☆13Updated 5 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• lasy / alto
  'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…
  ☆16Updated last year
• knightlab-analyses / reference-frames
  ☆20Updated 5 years ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆20Updated 8 months ago
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆19Updated 2 weeks ago
• statdivlab / paramedic
  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
  ☆14Updated last year
• gmteunisse / ggnested
  ggplots for nested data
  ☆10Updated 11 months ago
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆19Updated 3 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆47Updated last year
• mcalgaro93 / sc2meta
  Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…
  ☆10Updated 4 years ago
• mikemc / differential-abundance-theory
  A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
  ☆12Updated last year