Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
☆12Nov 28, 2023Updated 2 years ago
Alternatives and similar repositories for pgp_reconstruction
Users that are interested in pgp_reconstruction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆122Mar 23, 2026Updated last week
- ☆17May 13, 2025Updated 10 months ago
- ☆10Jul 4, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction☆16Jul 8, 2021Updated 4 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆67May 6, 2025Updated 10 months ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Jul 6, 2023Updated 2 years ago
- microbiome data simulation package☆22Oct 2, 2025Updated 5 months ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- Extract metadata from biosamples in NCBI☆17Mar 12, 2026Updated 2 weeks ago
- Enzyme-constrained genome-scale models in python☆36Oct 25, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆18Mar 17, 2021Updated 5 years ago
- PaperBLAST: find papers about a protein or its homologs☆51Mar 11, 2026Updated 2 weeks ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆69Updated this week
- ☆20Jul 12, 2023Updated 2 years ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jul 29, 2025Updated 8 months ago
- ☆11Dec 9, 2025Updated 3 months ago
- ☆10Oct 30, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A synthesis of bacterial and archaeal phenotypic trait data☆35Nov 9, 2023Updated 2 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆16Mar 12, 2026Updated 2 weeks ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Aug 13, 2021Updated 4 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆49Mar 17, 2026Updated last week
- snapper☆13Jul 8, 2024Updated last year
- ☆35Jan 21, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Manim animations for Youtube and teaching☆10Mar 11, 2025Updated last year
- Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense☆17Dec 17, 2025Updated 3 months ago
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 2 years ago
- ☆47Jun 11, 2025Updated 9 months ago
- Anki deck of 8,000 Sentences in Danish with translations and audio, ordered from easiest to hardest.☆10Jan 11, 2025Updated last year
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 5 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆208Mar 5, 2026Updated 3 weeks ago