Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
☆12Nov 28, 2023Updated 2 years ago
Alternatives and similar repositories for pgp_reconstruction
Users that are interested in pgp_reconstruction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Python package to study microbial communities using metabolic modeling.☆135Aug 11, 2026Updated last week
- ☆18Jun 5, 2026Updated 2 months ago
- ☆10Jul 4, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction☆17Jul 8, 2021Updated 5 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Jul 6, 2023Updated 3 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆74May 6, 2025Updated last year
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 2 months ago
- microbiome data simulation package☆22Oct 2, 2025Updated 10 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆77Jul 27, 2026Updated 3 weeks ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- PaperBLAST: find papers about a protein or its homologs☆53Jul 14, 2026Updated last month
- ☆10Dec 9, 2025Updated 8 months ago
- ☆20Jul 12, 2023Updated 3 years ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jun 17, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A synthesis of bacterial and archaeal phenotypic trait data☆36Nov 9, 2023Updated 2 years ago
- ☆10Oct 30, 2018Updated 7 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆18May 11, 2026Updated 3 months ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- Extract metadata from biosamples in NCBI☆17Mar 12, 2026Updated 5 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Aug 13, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆36Jan 21, 2026Updated 6 months ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- snapper☆14Jul 8, 2024Updated 2 years ago
- Manim animations for Youtube and teaching☆10Mar 11, 2025Updated last year
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 3 years ago
- A Flow-based Variational Autoencoder for Molecule Generation☆10Feb 21, 2022Updated 4 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 5 years ago