bacteria-archaea-traits / bacteria-archaea-traits
A synthesis of bacterial and archaeal phenotypic trait data
☆31Updated last year
Alternatives and similar repositories for bacteria-archaea-traits:
Users that are interested in bacteria-archaea-traits are comparing it to the libraries listed below
- ☆17Updated 2 years ago
- functions for analyzing phyloseq data☆26Updated last week
- Speedy versions of phyloseq functions☆46Updated 9 months ago
- 16S taxonomy assignment using an ecosystem-specific database.☆16Updated 2 years ago
- Plot microbiome time series in parallel☆25Updated last year
- R package for microbial pangenomics☆21Updated 2 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- ☆20Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 2 years ago
- ☆20Updated last year
- A set of R scripts for the analysis of microbial profiles☆42Updated 8 months ago
- A microbiome analysis toolkit for R☆21Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆21Updated this week
- ☆52Updated this week
- ☆30Updated 11 months ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆9Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- ☆10Updated 2 weeks ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 3 months ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Updated 5 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Simple R utilities for working with HMMER☆18Updated 4 months ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆70Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- dada2 formatted nifH database☆11Updated 8 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆15Updated last year