bacteria-archaea-traits / bacteria-archaea-traitsLinks
A synthesis of bacterial and archaeal phenotypic trait data
☆35Updated 2 years ago
Alternatives and similar repositories for bacteria-archaea-traits
Users that are interested in bacteria-archaea-traits are comparing it to the libraries listed below
Sorting:
- diversity estimation under ecological networks☆83Updated 4 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Various functions for analysis of microbial community data☆47Updated 2 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last month
- functions for analyzing phyloseq data☆28Updated 10 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Species richness with high diversity☆68Updated 4 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- R scripts for performing co-occurrence analyses☆35Updated 10 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- Implementation of CoNet in R☆16Updated 6 years ago
- R package for microbial pangenomics☆24Updated 3 years ago
- ☆21Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- Creating plasmid maps inside ggplot.☆89Updated 3 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- ☆43Updated last year
- ☆60Updated this week
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆20Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- ☆39Updated 8 months ago
- Miscellaneous functions for metagenomic analysis.☆51Updated 3 weeks ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 5 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- creating reference databases for amplicon sequencing☆41Updated 2 weeks ago