Enumerating biosynthetic pathways in metabolic networks
☆13Feb 5, 2025Updated last year
Alternatives and similar repositories for metquest
Users that are interested in metquest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆73May 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆25Updated this week
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated last month
- ☆11Aug 26, 2022Updated 3 years ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆12Jul 22, 2026Updated 2 weeks ago
- Flexible and accessible Python framework for cardiac electrophysiology simulations using finite-difference methods.☆13Jul 20, 2026Updated 3 weeks ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- ☆16Feb 5, 2026Updated 6 months ago
- ☆19Dec 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆26Feb 6, 2026Updated 6 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- ☆24Oct 19, 2023Updated 2 years ago
- Code depository for papers☆27Oct 22, 2025Updated 9 months ago
- The full package for the "multi-scale cardiac simulation framework" in C/C++☆12Feb 1, 2024Updated 2 years ago
- ☆13Jun 9, 2023Updated 3 years ago
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- Analysis of patch-seq data in pancreatic islets (ND, T2D and T1D)☆11May 9, 2020Updated 6 years ago
- The Cardiovascular Integrated Modelling and Simulation Environment's Open-Source Incompressibe Navier Stokes Finite Element Flowsolver☆14Jan 23, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- Ancestor/descendant tree from Mathematics Genealogy Project, rendered to HTML☆20Apr 22, 2024Updated 2 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Comprehensive ML curriculum: from NumPy to Neural Networks. 50+ Jupyter notebooks with from-scratch implementations and real-world projec…☆27Feb 28, 2026Updated 5 months ago
- Python package to study microbial communities using metabolic modeling.☆135Jul 20, 2026Updated 3 weeks ago
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 3 months ago
- An open-source python library for the processing of fluorescence video data☆17Jul 5, 2025Updated last year
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated 2 weeks ago
- In this tutorial we can use the Pytorchs efficient PCA implementation for performing data compression by retaining essential features of …☆19Oct 25, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 8 years ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- ☆36Jan 21, 2026Updated 6 months ago
- 基于大模型搭建的聊天机器人,同时支持 微信公众号、企业微信应用、飞书、钉钉 等接入,可选择GPT3.5/GPT-4o/GPT4.0/ Claude/文心一言/讯飞星火/通义千问/ Gemini/GLM-4/Claude/Kimi/LinkAI,能处理文本、语音和图片,访问操…☆11Feb 4, 2025Updated last year
- Python API and command-line tool for Sci-hub☆13Jun 26, 2021Updated 5 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 10 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago