RamanLab / metquest
Enumerating biosynthetic pathways in metabolic networks
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for metquest
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- ReFramed: metabolic modeling package☆56Updated 2 months ago
- Python package to study microbial communities using metabolic modeling.☆94Updated last week
- Python package for building and analyzing models using ModelSEED☆18Updated this week
- Computation of Microbial Ecosystems in Time and Space☆19Updated this week
- Toolbox for including enzyme constraints on a genome-scale model.☆67Updated 3 weeks ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆39Updated last month
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆34Updated 5 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆56Updated 3 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆26Updated last year
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆75Updated 8 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆20Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆12Updated 3 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆89Updated last month
- Discovery of conserved gene clusters in multiple genomes☆55Updated this week
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 5 months ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆46Updated last month
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆25Updated 5 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆34Updated 2 weeks ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆17Updated 3 months ago
- D3.js based visualizations of cobrapy metabolic models☆41Updated 4 years ago
- Python package for creating, calibrating and simulating RBA models☆11Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆158Updated 2 months ago
- Phage Annotation using Protein Structures☆85Updated 3 weeks ago
- PaperBLAST: find papers about a protein or its homologs☆35Updated this week
- Similarity networks of biosynthetic gene clusters☆69Updated this week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆35Updated 7 months ago
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆38Updated last month
- Enzyme models that take into account kinetics, allostery and thermodynamics☆26Updated 2 months ago