RamanLab / metquest
Enumerating biosynthetic pathways in metabolic networks
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for metquest
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Python package to study microbial communities using metabolic modeling.☆94Updated this week
- Python package for building and analyzing models using ModelSEED☆19Updated 2 weeks ago
- Computation of Microbial Ecosystems in Time and Space☆19Updated 2 weeks ago
- Toolbox for including enzyme constraints on a genome-scale model.☆66Updated last month
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 3 months ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆57Updated last month
- ReFramed: metabolic modeling package☆56Updated 3 months ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆11Updated 11 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆21Updated last year
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆13Updated last year
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆75Updated this week
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆39Updated last month
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆26Updated last year
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆17Updated 2 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆25Updated 5 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆46Updated this week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆34Updated 5 years ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆17Updated 3 months ago
- PaperBLAST: find papers about a protein or its homologs☆35Updated last week
- ☆35Updated 2 weeks ago
- Discovery of conserved gene clusters in multiple genomes☆56Updated 2 weeks ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆18Updated 6 months ago
- From annotated genomes to metabolic screening in large scale microbiotas☆53Updated 3 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆37Updated 7 months ago
- ☆22Updated 11 months ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Updated 2 years ago
- Python package simulating artificial selection on microbial communities☆14Updated last year
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago