Enumerating biosynthetic pathways in metabolic networks
☆13Feb 5, 2025Updated last year
Alternatives and similar repositories for metquest
Users that are interested in metquest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆74May 6, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆26Updated this week
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated 2 months ago
- ☆11Aug 26, 2022Updated 4 years ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆12Jul 22, 2026Updated last month
- Flexible and accessible Python framework for cardiac electrophysiology simulations using finite-difference methods.☆13Aug 13, 2026Updated 2 weeks ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- ☆16Feb 5, 2026Updated 6 months ago
- ☆19Dec 16, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆26Feb 6, 2026Updated 6 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- ☆24Oct 19, 2023Updated 2 years ago
- Code depository for papers☆27Oct 22, 2025Updated 10 months ago
- The full package for the "multi-scale cardiac simulation framework" in C/C++☆12Feb 1, 2024Updated 2 years ago
- ☆13Jun 9, 2023Updated 3 years ago
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- Analysis of patch-seq data in pancreatic islets (ND, T2D and T1D)☆11May 9, 2020Updated 6 years ago
- The Cardiovascular Integrated Modelling and Simulation Environment's Open-Source Incompressibe Navier Stokes Finite Element Flowsolver☆15Jan 23, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- Ancestor/descendant tree from Mathematics Genealogy Project, rendered to HTML☆20Apr 22, 2024Updated 2 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Comprehensive ML curriculum: from NumPy to Neural Networks. 50+ Jupyter notebooks with from-scratch implementations and real-world projec…☆27Feb 28, 2026Updated 6 months ago
- Python package to study microbial communities using metabolic modeling.☆135Updated this week
- Repository of tutorials for The COBRA Toolbox☆25Updated this week
- An open-source python library for the processing of fluorescence video data☆17Jul 5, 2025Updated last year
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated last month
- In this tutorial we can use the Pytorchs efficient PCA implementation for performing data compression by retaining essential features of …☆19Oct 25, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 8 years ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- ☆37Jan 21, 2026Updated 7 months ago
- 基于大模型搭建的聊天机器人,同时支持 微信公众号、企业微信应用、飞书、钉钉 等接入,可选择GPT3.5/GPT-4o/GPT4.0/ Claude/文心一言/讯飞星火/通义千问/ Gemini/GLM-4/Claude/Kimi/LinkAI,能处理文本、语音和图片,访问操…☆11Feb 4, 2025Updated last year
- Python API and command-line tool for Sci-hub☆13Jun 26, 2021Updated 5 years ago
- annotating microbial co-occurrence networks☆12Oct 7, 2025Updated 10 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago