Alternatives and similar repositories for metquest

Users that are interested in metquest are comparing it to the libraries listed below

• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆28Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆76Updated 3 months ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆23Updated 3 months ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆135Updated last year
• jdbrunner / surfin_fba
  Dynamic FBA for use with COBRApy metabolic models
  ☆10Updated last year
• micom-dev / micom
  Python package to study microbial communities using metabolic modeling.
  ☆104Updated 2 months ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆59Updated 3 months ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆62Updated 6 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆47Updated 5 years ago
• cdanielmachado / embl_gems
  EMBL GEMs: A collection of GEnome-scale Models for bacterial species
  ☆28Updated 6 years ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 6 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆57Updated 2 weeks ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆43Updated 5 months ago
• segrelab / comets
  Computation of Microbial Ecosystems in Time and Space
  ☆24Updated last month
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆83Updated 8 months ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆113Updated 2 months ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆175Updated 3 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆151Updated last year
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• emmamglass / reconstructor
  This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…
  ☆22Updated last month
• tlawrence3 / amPEPpy
  ☆26Updated last year
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆121Updated last week
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆83Updated 2 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated 2 months ago
• cdanielmachado / smetana
  SMETANA: a tool to analyse interactions in microbial communities
  ☆61Updated 3 months ago
• lobolab / mergem
  mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models
  ☆13Updated last week
• antismash / antismash
  antiSMASH
  ☆217Updated this week
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago