lch14forever / beem-staticLinks
📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
☆10Updated 4 years ago
Alternatives and similar repositories for beem-static
Users that are interested in beem-static are comparing it to the libraries listed below
Sorting:
- diversity estimation under ecological networks☆83Updated 5 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 7 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Linear Decomposition Model☆25Updated 2 years ago
- ☆11Updated 8 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Species richness with high diversity☆68Updated 4 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- ☆13Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- R package computes correlation for relative abundances☆13Updated 8 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated 2 years ago
- Implementation of CoNet in R☆16Updated 6 years ago
- ☆20Updated 5 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 3 years ago
- accessory functions for processing microbial community data☆12Updated 3 years ago
- Various functions for analysis of microbial community data☆47Updated 2 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆34Updated 6 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- ggplots for nested data☆10Updated last year
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 3 years ago
- Miscellaneous functions for metagenomic analysis.☆51Updated last month
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 7 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last month