Genome-wide Efficient Mixed Model Association
☆405Dec 10, 2025Updated 5 months ago
Alternatives and similar repositories for GEMMA
Users that are interested in GEMMA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome Association Predict Integrate Tools☆233Updated this week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆206Aug 15, 2024Updated last year
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated last year
- A library for running k-mers based GWAS☆125Oct 29, 2024Updated last year
- Python API for comprehensive GWAS analysis using GEMMA☆106Sep 6, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SMC++ infers population history from whole-genome sequence data.☆176Jan 20, 2024Updated 2 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆216Jul 5, 2025Updated 10 months ago
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆327May 16, 2026Updated last week
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Zhou & Stephens (2014) GEMMA multivariate linear mixed model☆13Oct 24, 2020Updated 5 years ago
- 📊 Circular and Rectangular Manhattan Plot☆637May 8, 2026Updated 2 weeks ago
- ☆115Oct 3, 2025Updated 7 months ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆58Sep 6, 2025Updated 8 months ago
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 5 years ago
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago
- RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."☆26Apr 25, 2023Updated 3 years ago
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆14Mar 6, 2018Updated 8 years ago
- ☆21Nov 15, 2024Updated last year
- Methods for examining PCA locally along the genome.☆89Aug 13, 2024Updated last year
- Create regional association plots from GWAS or meta-analysis☆64Jan 21, 2020Updated 6 years ago
- Synteny and Rearrangement Identifier☆468Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- General tools for genomic analyses.☆390Mar 25, 2026Updated 2 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- ☆11Jan 31, 2018Updated 8 years ago
- source code for EVM☆124Nov 29, 2024Updated last year
- A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.☆167May 9, 2025Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆336Jul 7, 2023Updated 2 years ago
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 9 years ago
- Program for analysing NGS data.☆260Mar 6, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package for multivariate adaptive shrinkage.☆97Nov 7, 2024Updated last year
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Haplotype based scans for selection☆148Apr 30, 2026Updated 3 weeks ago
- Read PLINK BED/BIM/FAM files into R☆45Jul 26, 2021Updated 4 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆99Aug 28, 2023Updated 2 years ago
- The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN int…☆35Dec 29, 2025Updated 4 months ago
- ☆36Jan 22, 2022Updated 4 years ago