Alternatives and similar repositories for vcf2gwas

Users that are interested in vcf2gwas are comparing it to the libraries listed below

• BGI-shenzhen / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆173Updated last year
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆84Updated 2 weeks ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆147Updated 8 months ago
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆81Updated last week
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆149Updated 11 months ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆159Updated 8 months ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆128Updated 4 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆212Updated last month
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆148Updated last month
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated 6 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆149Updated 2 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆54Updated 2 years ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆217Updated last week
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆187Updated this week
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆80Updated 9 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆138Updated 3 years ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated last year
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆109Updated 6 months ago
• wjwei-handsome / wgatools
  Whole Genome Alignment Tools
  ☆191Updated this week
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆87Updated 8 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆123Updated 2 years ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆118Updated 7 months ago
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆99Updated 2 weeks ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆108Updated last week
• epi2me-labs / wf-transcriptomes
  ☆91Updated last week
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆213Updated 4 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆126Updated 9 months ago
• epi2me-labs / wf-human-variation
  ☆124Updated this week