frankvogt / vcf2gwasLinks
Python API for comprehensive GWAS analysis using GEMMA
☆101Updated 2 years ago
Alternatives and similar repositories for vcf2gwas
Users that are interested in vcf2gwas are comparing it to the libraries listed below
Sorting:
- FEELnc : FlExible Extraction of LncRNA☆90Updated 4 months ago
- A small-RNA sequencing analysis pipeline☆97Updated this week
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated last month
- Python programs for processing GFF3 files☆101Updated last year
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 2 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆82Updated 5 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆89Updated 3 weeks ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆193Updated 4 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆104Updated 9 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last week
- WisecondorX — An evolved WISECONDOR☆107Updated 3 months ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- SV detection tool for nanopore sequence reads☆95Updated 7 months ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- My bioinfo toolbox☆50Updated 9 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆161Updated 7 months ago
- ☆107Updated last month
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆110Updated 5 months ago
- tutorial on pggb☆36Updated 10 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 4 months ago
- source code for EVM☆119Updated 11 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆117Updated 4 months ago
- HiC uniform processing pipeline☆61Updated 2 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆95Updated last month