rcc-uchicago / genetic-data-analysis-2
RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."
☆24Updated 2 years ago
Alternatives and similar repositories for genetic-data-analysis-2:
Users that are interested in genetic-data-analysis-2 are comparing it to the libraries listed below
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Enhanced version of the FastQTL QTL mapper☆64Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆58Updated 5 months ago
- Evolutionary Transcriptomics with R☆42Updated 2 weeks ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 4 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- tutorial on pggb☆34Updated 3 months ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆83Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated last week
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated 2 weeks ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆35Updated last month
- ☆30Updated 3 years ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated 2 months ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Updated 4 years ago
- Bayesian hierarchical model for complex trait analysis☆44Updated last year
- ☆40Updated 7 years ago
- 4C-seq processing pipeline☆23Updated last month
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- ☆27Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆49Updated 4 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 9 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last week
- Pinpoints the mutation favored by selection☆34Updated 3 years ago