rcc-uchicago / genetic-data-analysis-2
RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."
☆24Updated last year
Alternatives and similar repositories for genetic-data-analysis-2:
Users that are interested in genetic-data-analysis-2 are comparing it to the libraries listed below
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 3 months ago
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆64Updated 2 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆82Updated 2 years ago
- Evolutionary Transcriptomics with R☆42Updated 2 weeks ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated 3 months ago
- tutorial on pggb☆32Updated 2 months ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆49Updated last year
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 8 months ago
- Here we present a method to plot the outputs of RFMIX version 2☆23Updated 7 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆57Updated 4 months ago
- R code to compute the Singleton Density Score (SDS)☆28Updated 8 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- ☆70Updated 3 years ago
- De novo annotation of young retrotransposons☆48Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆38Updated 11 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆50Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated last month
- Bayesian hierarchical model for complex trait analysis☆44Updated last year
- ☆20Updated 4 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- web documentation for Trinotate☆48Updated 2 years ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆28Updated 3 months ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆34Updated last year