jiabowang / GAPITLinks
Genome Association Predict Integrate Tools
☆212Updated this week
Alternatives and similar repositories for GAPIT
Users that are interested in GAPIT are comparing it to the libraries listed below
Sorting:
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆199Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆189Updated 3 months ago
- ☆187Updated 5 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆319Updated 2 years ago
- Visualize and annotate genomic coverage with ggplot2☆264Updated 9 months ago
- A comprehensive R package for deep mining microbiome☆190Updated last month
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆313Updated last month
- Make Picrust2 Output Analysis and Visualization Easier☆164Updated 2 weeks ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆345Updated 4 months ago
- Genome Assembly and Annotation Service code☆216Updated last year
- Helper Functions for Interactive Tree Of Life (iTOL)☆179Updated last month
- Web application to explore the Sequence Read Archive.☆217Updated 3 months ago
- Metagenome analysis pipeline☆99Updated 4 years ago
- an R/shiny application for creation of Circos plot interactively☆157Updated 3 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆276Updated last month
- ☆126Updated 4 years ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆174Updated 3 weeks ago
- Read trimming tool for Illumina NGS data.☆146Updated 10 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆242Updated 4 years ago
- A library for running k-mers based GWAS☆116Updated last year
- A simple gene co-expression analyses workflow powered by tidyverse and graph analyses☆209Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆225Updated 3 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆278Updated 2 months ago
- ☆20Updated 6 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆271Updated 3 weeks ago
- Codebook from my GWAS cookbook☆193Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆245Updated 3 months ago
- Program for analysing NGS data.☆245Updated 7 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆224Updated 2 weeks ago
- ☆122Updated 2 weeks ago