jiabowang / GAPITLinks
Genome Association Predict Integrate Tools
☆210Updated last week
Alternatives and similar repositories for GAPIT
Users that are interested in GAPIT are comparing it to the libraries listed below
Sorting:
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆198Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆188Updated 3 months ago
- ☆183Updated 5 years ago
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆312Updated 3 weeks ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆318Updated 2 years ago
- Visualize and annotate genomic coverage with ggplot2☆262Updated 8 months ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆342Updated 4 months ago
- A library for running k-mers based GWAS☆116Updated 11 months ago
- A comprehensive R package for deep mining microbiome☆190Updated 2 weeks ago
- Program for analysing NGS data.☆243Updated 7 months ago
- Genome Assembly and Annotation Service code☆214Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆159Updated last week
- Web application to explore the Sequence Read Archive.☆217Updated 2 months ago
- an R/shiny application for creation of Circos plot interactively☆157Updated 3 years ago
- Codebook from my GWAS cookbook☆193Updated 3 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆224Updated 3 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆172Updated last week
- Helper Functions for Interactive Tree Of Life (iTOL)☆176Updated 2 weeks ago
- ☆126Updated 3 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆241Updated 4 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆272Updated 3 weeks ago
- A simple gene co-expression analyses workflow powered by tidyverse and graph analyses☆207Updated last month
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆118Updated 4 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆242Updated 2 months ago
- Read trimming tool for Illumina NGS data.☆146Updated 10 years ago
- Metagenome analysis pipeline☆99Updated 4 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- ☆20Updated 6 years ago
- Haplotype based scans for selection☆132Updated this week
- TransDecoder source☆298Updated last week