Genome Association Predict Integrate Tools
☆237Jul 17, 2026Updated last week
Alternatives and similar repositories for GAPIT
Users that are interested in GAPIT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆333May 27, 2026Updated last month
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆40Mar 24, 2025Updated last year
- The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN int…☆35Dec 29, 2025Updated 6 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆223Jul 5, 2025Updated last year
- Perform GWAS using the FarmCPU model.☆26Dec 14, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A library for running k-mers based GWAS☆127Oct 29, 2024Updated last year
- Genome-wide Efficient Mixed Model Association☆411Dec 10, 2025Updated 7 months ago
- ☆11Mar 14, 2026Updated 4 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆209Jul 16, 2026Updated last week
- ☆17Nov 26, 2023Updated 2 years ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆64Jun 18, 2026Updated last month
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated last year
- blupADC:An useful tool for animal and plant breeding☆32Nov 22, 2024Updated last year
- SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.☆40Apr 5, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆108Jun 20, 2026Updated last month
- ☆23Aug 22, 2019Updated 6 years ago
- QTL-seq pipeline to identify causative mutations responsible for a phenotype☆65Mar 21, 2026Updated 4 months ago
- 📊 Circular and Rectangular Manhattan Plot☆645May 8, 2026Updated 2 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆107Jun 13, 2022Updated 4 years ago
- Heritability in plant breeding - R and SAS code examples☆41Feb 27, 2021Updated 5 years ago
- A haplotype analysis toolkit for natural variation study.☆35Oct 3, 2023Updated 2 years ago
- ☆23Oct 30, 2022Updated 3 years ago
- ☆25Mar 27, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated last year
- Application of pan-genome for population☆121Oct 26, 2025Updated 8 months ago
- ☆11Jan 31, 2018Updated 8 years ago
- ☆33Apr 7, 2025Updated last year
- Build haplotye and generate figures☆20Nov 4, 2025Updated 8 months ago
- R front-end for TASSEL 5☆34May 15, 2026Updated 2 months ago
- DNNGP: Deep neural network for genomic prediction☆90Jul 30, 2025Updated 11 months ago
- Lectures, documents and presentations☆15May 28, 2026Updated last month
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆116Jul 16, 2026Updated last week
- iPat allows you to perform GWAS and GS with drags and clicks!☆11Jul 12, 2022Updated 4 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated this week
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆20Jul 13, 2020Updated 6 years ago
- asremlPlus is an R package that augments the use of 'ASReml-R' and 'ASReml4-R' in fitting mixed models☆22Jul 17, 2026Updated last week
- ☆21Nov 15, 2024Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆339Jul 7, 2023Updated 3 years ago