Alternatives and similar repositories for bGWAS

Users that are interested in bGWAS are comparing it to the libraries listed below

• adhikari-statgen-lab / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated last month
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆51Updated 8 months ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated 2 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆33Updated 5 months ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆38Updated 2 months ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 5 months ago
• Nealelab / whole_genome_analysis_pipeline
  ☆20Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆39Updated 11 months ago
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆95Updated 9 months ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆19Updated 2 weeks ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆69Updated last year
• fhormoz / caviar
  ☆63Updated 3 years ago
• Atkinson-Lab / Tractor
  Scripts for implementing the Tractor pipeline
  ☆53Updated 2 months ago
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆50Updated 7 months ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆25Updated last year
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 5 months ago
• Bioconductor / GenomicFeatures
  Query the gene models of a given organism/assembly
  ☆27Updated 3 weeks ago
• pcgoddard / Burchardlab_Tutorials
  ☆30Updated 4 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆47Updated 3 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 2 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 weeks ago
• UW-GAC / GENESIS
  GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…
  ☆42Updated last month