iquasere / UPIMAPILinks
UniProt Id Mapping through API
☆35Updated last month
Alternatives and similar repositories for UPIMAPI
Users that are interested in UPIMAPI are comparing it to the libraries listed below
Sorting:
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆156Updated 10 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated last month
- Discovery of conserved gene clusters in multiple genomes☆110Updated 5 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆87Updated 2 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- Software for predicting translation initiation rates in bacteria☆29Updated 2 months ago
- sensitive and precise assembly of short sequencing reads☆161Updated last year
- BGC Detection and Classification Using Deep Learning☆155Updated last year
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆15Updated 2 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆102Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆96Updated 8 months ago
- Protein structure alignment and search algorithm☆73Updated this week
- Logan Unitigs and Contigs☆174Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆153Updated this week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 7 months ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆17Updated 5 months ago
- ☆29Updated last year
- ☆12Updated 10 months ago
- snakemake pipeline for creating trees from sequence sets☆91Updated this week
- Phage Annotation using Protein Structures☆131Updated last month
- Similarity networks of biosynthetic gene clusters☆138Updated 2 weeks ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆25Updated 2 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆115Updated 11 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆22Updated 7 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆67Updated 3 weeks ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- A Pure-Python parser of HMMER3 output☆18Updated last year
- Cython bindings and Python interface to HMMER3.☆148Updated this week
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago