iquasere / UPIMAPILinks
UniProt Id Mapping through API
☆34Updated 10 months ago
Alternatives and similar repositories for UPIMAPI
Users that are interested in UPIMAPI are comparing it to the libraries listed below
Sorting:
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆142Updated 8 months ago
- BGC Detection and Classification Using Deep Learning☆152Updated last year
- Protein structure alignment and search algorithm☆69Updated last week
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- Software for predicting translation initiation rates in bacteria☆29Updated 3 weeks ago
- snakemake pipeline for creating trees from sequence sets☆85Updated 3 months ago
- Discovery of conserved gene clusters in multiple genomes☆83Updated 3 months ago
- Logan Unitigs and Contigs☆145Updated 3 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆86Updated 2 weeks ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆22Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- ☆11Updated 8 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆101Updated last year
- sensitive and precise assembly of short sequencing reads☆160Updated 10 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 5 months ago
- Phage Annotation using Protein Structures☆123Updated this week
- Cython bindings and Python interface to HMMER3.☆146Updated last week
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆14Updated 3 months ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated this week
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆147Updated 3 weeks ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- Attentive deep learning model for antimicrobial peptide prediction☆52Updated 5 months ago
- ☆27Updated last year
- RNA secondary structure/sequence profiles for homology search and alignment☆113Updated 9 months ago
- A Pure-Python parser of HMMER3 output☆17Updated 10 months ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated last week
- Similarity networks of biosynthetic gene clusters☆126Updated this week
- a pipeline to build similarity maps of protein space☆37Updated 8 months ago