riffomonas / distances

Related projects ⓘ

Alternatives and complementary repositories for distances

• DaliangNing / NST
  Normalized Stochasticity Ratio in community assembly
  ☆25Updated 3 weeks ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆41Updated last year
• leffj / mctoolsr
  Microbial community analysis tools in R
  ☆20Updated 2 years ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆18Updated last year
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆17Updated 4 years ago
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆69Updated last year
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 11 months ago
• cmerkes / qPCR_LOD_Calc
  LoD calculator
  ☆18Updated 5 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆22Updated 2 years ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 11 months ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• emmanuelparadis / ape
  analysis of phylogenetics and evolution
  ☆53Updated this week
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆46Updated 4 months ago
• defleury / Schmidt_et_al_2016_community_similarity
  Analysis code for a manuscript on community similarity computation
  ☆14Updated 5 years ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆9Updated 6 years ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆13Updated last year
• gmteunisse / ggnested
  ggplots for nested data
  ☆10Updated 3 months ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆32Updated 2 years ago
• shaunpwilkinson / insect
  Informatic Sequence Classification Trees
  ☆14Updated 3 years ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆104Updated last month
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆107Updated 3 weeks ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆68Updated 5 months ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated 5 months ago
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 9 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 8 years ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• Tom-Jenkins / mapmixture
  R package and web app for spatial visualisation of admixture on a projected map
  ☆40Updated last month
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆26Updated 3 months ago
• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆17Updated 4 months ago