songlab-cal / CPTLinks
Cross-protein transfer learning for variant effect prediction
☆20Updated 2 years ago
Alternatives and similar repositories for CPT
Users that are interested in CPT are comparing it to the libraries listed below
Sorting:
- Rendering protein mutation movies from predicted 3D structures☆20Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆32Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- ☆23Updated 2 years ago
- Code for LazyAF pipeline☆21Updated last year
- ☆30Updated 2 years ago
- ☆36Updated 10 months ago
- ☆44Updated last year
- ☆74Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- ☆25Updated 2 years ago
- Biological prediction models made simple.☆46Updated 3 weeks ago
- Evolutionary conservation estimation of residues or nucleotides☆54Updated 3 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆64Updated last year
- ☆47Updated last month
- ☆18Updated 6 months ago
- Detection of remote homology by comparison of protein language model representations☆57Updated 11 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- Evolutionary velocity with protein language models☆94Updated last week
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆82Updated 2 years ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆14Updated 7 months ago
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆46Updated 3 years ago
- ☆39Updated 4 years ago
- ☆25Updated last year
- ☆28Updated 11 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 7 months ago
- A domain parser for Alphafold models☆43Updated last year