songlab-cal / CPT
Cross-protein transfer learning for variant effect prediction
☆20Updated last year
Alternatives and similar repositories for CPT:
Users that are interested in CPT are comparing it to the libraries listed below
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆24Updated last year
- ☆22Updated last year
- Code for LazyAF pipeline☆21Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆33Updated 2 weeks ago
- Evolutionary conservation estimation of residues or nucleotides☆37Updated 2 years ago
- Fast protein domain structure embedding+search tool☆14Updated this week
- ☆32Updated 5 months ago
- ☆35Updated 2 months ago
- ☆29Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆35Updated 5 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆44Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆28Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- a collection of colabs useful for molecular biology☆31Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆30Updated 3 weeks ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- A package for making tree-based visualizations for embedding vectors☆9Updated 2 years ago
- Diverse Genomic Embedding Benchmark☆43Updated 5 months ago
- ColabFold protocol☆50Updated 5 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆19Updated 3 weeks ago
- ☆24Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated 10 months ago
- ☆25Updated 3 months ago