Alternatives and similar repositories for CPT

Users that are interested in CPT are comparing it to the libraries listed below

• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated 2 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 9 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆14Updated 6 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• JudeWells / chainsaw
  ☆43Updated last year
• maslov-group / DR-BERT
  ☆25Updated 2 years ago
• clairemcwhite / vcmsa
  ☆30Updated 2 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 6 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated last month
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆65Updated 3 years ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆55Updated last year
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆44Updated 2 weeks ago
• TattaBio / gLM2
  ☆70Updated last year
• ntranoslab / esm-variants
  ☆80Updated 2 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 4 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated last month
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 6 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆51Updated 3 years ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆41Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆40Updated last year