ihh / bilbyLinks
Jax code for functional genomics ML
☆14Updated 8 months ago
Alternatives and similar repositories for bilby
Users that are interested in bilby are comparing it to the libraries listed below
Sorting:
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 4 months ago
- Annotated sequence data☆11Updated 9 months ago
- ☆42Updated 4 months ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆53Updated last month
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆21Updated 2 months ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- Machine learning methods for DNA sequence analysis.☆57Updated 3 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆42Updated 2 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆95Updated 5 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆22Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆24Updated 5 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆38Updated 8 months ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 7 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 11 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆87Updated 2 weeks ago
- ☆18Updated last year
- ☆24Updated last year
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆25Updated last week
- ☆93Updated 3 weeks ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆18Updated last month
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆86Updated 2 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 10 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 7 months ago
- ☆17Updated last week
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- ☆10Updated 2 years ago
- A fast dataloader for bigwig files made for machine learning☆28Updated 2 weeks ago