jmschrei / tfmodisco-liteLinks
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
☆86Updated 3 months ago
Alternatives and similar repositories for tfmodisco-lite
Users that are interested in tfmodisco-lite are comparing it to the libraries listed below
Sorting:
- This repository hosts a minimal version of a Python API for BPNet.☆53Updated 2 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆90Updated 2 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 10 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 3 months ago
- code to run sei and obtain sei and sequence class predictions☆110Updated 3 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆201Updated 4 months ago
- ☆34Updated 11 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 9 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆93Updated 10 months ago
- TF MOtif Discovery from Importance SCOres☆161Updated last month
- ☆25Updated last year
- Biological sequence analysis for the modern age.☆260Updated last month
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆51Updated 2 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆59Updated 3 weeks ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 11 months ago
- Machine learning methods for DNA sequence analysis.☆57Updated 4 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆91Updated 2 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated last year
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆169Updated 3 months ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆56Updated last week
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- ☆57Updated last month
- ☆42Updated 5 months ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 11 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago