A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
☆91Sep 24, 2025Updated 8 months ago
Alternatives and similar repositories for tfmodisco-lite
Users that are interested in tfmodisco-lite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Biological sequence analysis for the modern age.☆274Updated this week
- TF MOtif Discovery from Importance SCOres☆180May 13, 2026Updated 2 weeks ago
- This repository hosts a minimal version of a Python API for BPNet.☆56Jan 24, 2026Updated 4 months ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated 11 months ago
- ☆19Mar 24, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆18Mar 2, 2026Updated 2 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆224May 13, 2026Updated 2 weeks ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆55Jan 19, 2026Updated 4 months ago
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated 3 months ago
- Species-aware DNA language models capture regulatory elements and their evolution☆29Aug 21, 2023Updated 2 years ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆323Apr 14, 2026Updated last month
- Species-aware DNA language modeling☆18Jan 25, 2023Updated 3 years ago
- A python extension for quick access to bigWig and bigBed files☆244Jan 14, 2026Updated 4 months ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆20Aug 28, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆28Mar 13, 2025Updated last year
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆181Mar 19, 2026Updated 2 months ago
- ☆11Feb 6, 2023Updated 3 years ago
- Genomic sequence preprocessing toolkit☆13Updated this week
- ☆12Oct 10, 2024Updated last year
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆21Apr 15, 2026Updated last month
- ☆13Jan 23, 2025Updated last year
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 5 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆564Jul 7, 2025Updated 10 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆65Apr 1, 2026Updated last month
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆98Mar 1, 2025Updated last year
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆30Dec 13, 2024Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆104Mar 3, 2025Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆243Aug 28, 2025Updated 8 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- ☆72May 7, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆23Jun 18, 2022Updated 3 years ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14May 20, 2026Updated last week
- ☆21Jul 16, 2024Updated last year
- ☆50Mar 22, 2026Updated 2 months ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆20Mar 29, 2026Updated last month
- ☆25Aug 20, 2024Updated last year
- Dataloader for applying sequence models to personalized genomics☆30May 20, 2026Updated last week