jmschrei / tfmodisco-liteLinks
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
☆78Updated 3 weeks ago
Alternatives and similar repositories for tfmodisco-lite
Users that are interested in tfmodisco-lite are comparing it to the libraries listed below
Sorting:
- This repository hosts a minimal version of a Python API for BPNet.☆40Updated this week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆56Updated last week
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Updated 2 months ago
- ☆28Updated 4 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆160Updated 3 months ago
- Dataloader for applying sequence models to personalized genomics☆26Updated this week
- code to run sei and obtain sei and sequence class predictions☆104Updated 2 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated last week
- A method for analyzing scATAC-seq experiments.☆30Updated 2 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 6 months ago
- ☆23Updated 9 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated 3 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated 10 months ago
- Computational Optimization of DNA Activity (CODA)☆59Updated 2 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated 6 months ago
- Biological sequence analysis for the modern age.☆223Updated 3 weeks ago
- ☆34Updated last month
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆87Updated 8 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆88Updated last month
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 4 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆39Updated last week
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆75Updated last month
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆97Updated 4 months ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆18Updated 8 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆93Updated 4 years ago
- Tools for working with BUS files☆99Updated last week
- ☆38Updated last month