bodegalab / tecountView external linksLinks
A package to count reads mapping on transposable elements subfamilies, families and classes.
☆12Feb 3, 2023Updated 3 years ago
Alternatives and similar repositories for tecount
Users that are interested in tecount are comparing it to the libraries listed below
Sorting:
- Snakemake pipeline to analyze transposable element 'omics data.☆30Jan 19, 2026Updated 3 weeks ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Jul 27, 2025Updated 6 months ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Species-aware DNA language models capture regulatory elements and their evolution☆27Aug 21, 2023Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆30Jan 30, 2026Updated 2 weeks ago
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 8 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆37Jan 14, 2025Updated last year
- Generate robust DNA barcode sets☆33Feb 6, 2024Updated 2 years ago
- Protein Purification☆11Dec 7, 2016Updated 9 years ago
- Quantification of transposable element expression using RNA-seq☆84Feb 8, 2024Updated 2 years ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆38Oct 9, 2025Updated 4 months ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 weeks ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Jan 30, 2026Updated 2 weeks ago
- CAncer Standards Long-read Evaluation☆52Nov 7, 2025Updated 3 months ago
- Estimate locus specific human LINE-1 expression.☆39Jan 19, 2026Updated 3 weeks ago
- sequence alignment. global, local, glocal.☆42Dec 21, 2016Updated 9 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 3 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆14Aug 6, 2024Updated last year
- MCHelper: An automatic tool to curate transposable element libraries☆45Jul 3, 2025Updated 7 months ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated last month
- ☆13May 31, 2025Updated 8 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 4 years ago
- LongSom tool for long-reads☆11May 20, 2025Updated 8 months ago
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated last year
- ☆16Jan 14, 2026Updated 3 weeks ago
- Tumor type classifier using cancer genomic panel sequencing data☆12Mar 12, 2024Updated last year
- IPSS-M study☆13Apr 3, 2023Updated 2 years ago
- Repository for transferGWAS, a deep learning method for performing genome-wide association studies on full medical imaging data.☆14Jul 29, 2022Updated 3 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated 11 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆85Jul 4, 2022Updated 3 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆111Jan 27, 2026Updated 2 weeks ago
- Dfam Transposable Element Tools Docker container.☆101Dec 17, 2025Updated last month
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 6 months ago
- ☆10Jun 9, 2025Updated 8 months ago
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 8 years ago