iCodon customizes gene expression based on the codon composition
☆16Oct 28, 2023Updated 2 years ago
Alternatives and similar repositories for iCodon
Users that are interested in iCodon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆44Sep 12, 2024Updated 2 years ago
- Species-aware DNA language models capture regulatory elements and their evolution☆28Aug 21, 2023Updated 3 years ago
- NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model☆14Jul 20, 2026Updated 2 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆25Jul 29, 2026Updated 2 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Associated code/pipeline for the publication "AI-assisted protein design to rapidly convert antibody sequences to intrabodies targeting d…☆17Feb 18, 2025Updated last year
- Cell type purification by single-cell transcriptome-trained sorting☆16Jul 8, 2019Updated 7 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆15Oct 17, 2017Updated 9 years ago
- A pure Python implementation of the SBOL standard.☆23Aug 11, 2026Updated 2 months ago
- ☆16Aug 25, 2026Updated last month
- A neural based approach to the task of genetic codon optimization☆19Aug 17, 2020Updated 6 years ago
- ☆10Mar 11, 2025Updated last year
- REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability☆15Dec 16, 2023Updated 2 years ago
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆101Nov 11, 2025Updated 11 months ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Repo for advertising and organizing VICC, CGC, CIViC, & ClinGen Somatic: Variant Curation & Coding Unconference/meeting activities☆10Jun 2, 2026Updated 4 months ago
- Make rapid visualizations of RNA-seq data in R☆21Oct 7, 2025Updated last year
- A statistical simulator for rational scRNA-seq experimental design☆14Dec 14, 2020Updated 5 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- Open database of scholarly journals☆11Oct 26, 2022Updated 3 years ago
- 📊 An R package of RNA-seq workflow☆16May 4, 2022Updated 4 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Jul 30, 2026Updated 2 months ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Updated this week
- Tools for describing and manipulating demographic models.☆18Aug 4, 2026Updated 2 months ago
- An R package for manipulating phylogentic trees☆11Nov 1, 2020Updated 5 years ago
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆12Sep 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gene-level general linear mixed model☆26Oct 1, 2025Updated last year
- R package for the analysis of OK-Seq data to study DNA replication fork directionality: from count matrices, RFD calculation to inititati…☆12Feb 8, 2023Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆30May 15, 2024Updated 2 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- Single-cell Orientation Tracing☆21Jan 23, 2022Updated 4 years ago
- ☆20Oct 2, 2024Updated 2 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago