Alternatives and similar repositories for species-aware-DNA-LM:

Users that are interested in species-aware-DNA-LM are comparing it to the libraries listed below

• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• DasLab / draw_rna
  Draw RNA secondary structures in python.
  ☆47Updated 7 months ago
• ntranoslab / esm-variants
  ☆72Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆44Updated 3 weeks ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆41Updated this week
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated 2 weeks ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆26Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆73Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆64Updated 7 years ago
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆57Updated 8 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆47Updated 7 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 2 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆38Updated 3 years ago
• kundajelab / DART-Eval
  ☆33Updated this week
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 8 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated last week
• alchemab / bcr-repertoire-papers
  Collection of papers related to BCR repertoire analyses
  ☆18Updated 3 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆45Updated 5 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆35Updated 5 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆35Updated 2 months ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• JudeWells / chainsaw
  ☆37Updated 6 months ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 2 months ago
• VariantEffect / mavedb-api
  MaveDB API
  ☆13Updated this week
• TattaBio / gLM2
  ☆61Updated 6 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆35Updated 6 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year