Species-aware DNA language modeling
☆18Jan 25, 2023Updated 3 years ago
Alternatives and similar repositories for species-aware-DNA-LM
Users that are interested in species-aware-DNA-LM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Species-aware DNA language models capture regulatory elements and their evolution☆29Aug 21, 2023Updated 2 years ago
- ☆12Feb 6, 2023Updated 3 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆92Sep 24, 2025Updated 10 months ago
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for the Framepool model☆16Feb 1, 2025Updated last year
- Fast protein domain structure embedding+search tool☆31Sep 21, 2025Updated 10 months ago
- This program can be used to parse the NCBI GenBank file to create a tabulated csv file.☆10Mar 4, 2019Updated 7 years ago
- Genomic Pre-trained Network☆352Jul 25, 2026Updated 3 weeks ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- 🔗 PyTorch implementation of the Parallelized Natural Extension Reference Frame algorithm☆21Sep 8, 2018Updated 7 years ago
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 2 months ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 4 months ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- The official repository for the ARSENAL model☆18Jul 3, 2026Updated last month
- Fast, Accurate, Lightweight Python library to make State of the Art Embedding☆20Jan 25, 2026Updated 6 months ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated 2 years ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆23Jul 22, 2026Updated 3 weeks ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- Python library for using the CaltechDATA API☆13Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sandbox for Deep-Learning based Computational Protein Design☆121Updated this week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆133Oct 31, 2024Updated last year
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- Napari plugin for working with video files.☆13Aug 20, 2025Updated 11 months ago
- Structure-aware fine-tuning of protein language models for joint prediction of multiple developability properties from protein structure …☆37Jul 5, 2026Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆58Feb 11, 2026Updated 6 months ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆22Aug 28, 2025Updated 11 months ago
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated 2 years ago
- simple transformations in the plane☆17Jan 30, 2016Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- ☆24Jul 27, 2026Updated 3 weeks ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- OCTAVVS: Open Chemometrics Toolbox for Analysis and Visualization of Vibrational Spectroscopy data☆16Jan 28, 2026Updated 6 months ago
- [IJCAI 2024] An Embarrassingly Simple Approach to Enhance Transformer Performance in Genomic Selection for Crop Breeding☆20Dec 12, 2024Updated last year
- ☆30Nov 6, 2022Updated 3 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago