DennisGankin / species-aware-DNA-LMLinks
Species-aware DNA language modeling
☆18Updated 2 years ago
Alternatives and similar repositories for species-aware-DNA-LM
Users that are interested in species-aware-DNA-LM are comparing it to the libraries listed below
Sorting:
- Evolutionary velocity with protein language models☆94Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Biological prediction models made simple.☆44Updated last week
- GraphPart, a data partitioning method for ML on biological sequences☆29Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated last year
- Mutation effects predicted from sequence co-variation☆68Updated 7 years ago
- ☆77Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- Neural Networks for Protein Sequence Alignment☆125Updated 9 months ago
- ☆70Updated 10 months ago
- Diverse Genomic Embedding Benchmark☆46Updated 5 months ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆58Updated 4 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 4 months ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆18Updated last year
- Draw RNA secondary structures in python.☆48Updated 2 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 2 years ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated 11 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆81Updated last year
- Genomic language model predicts protein co-regulation and function☆81Updated 5 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- ☆24Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- ☆36Updated 7 months ago
- Fast protein structure searching or your money back☆111Updated 4 months ago