DennisGankin / species-aware-DNA-LMLinks
Species-aware DNA language modeling
☆18Updated 2 years ago
Alternatives and similar repositories for species-aware-DNA-LM
Users that are interested in species-aware-DNA-LM are comparing it to the libraries listed below
Sorting:
- Evolutionary velocity with protein language models☆93Updated last year
- Diverse Genomic Embedding Benchmark☆46Updated 3 months ago
- Biological prediction models made simple.☆44Updated this week
- ☆74Updated last year
- Draw RNA secondary structures in python.☆48Updated 3 weeks ago
- ☆70Updated 9 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated 11 months ago
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆46Updated 5 years ago
- Comprehensive Python client for the Uniprot REST API☆50Updated 3 weeks ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- python tools for TCR:peptide-MHC modeling and analysis☆79Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 11 months ago
- MMseqs2 app to run on your workstation or servers☆87Updated last week
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆39Updated 10 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- Feature map and function annotation of Proteins☆33Updated last year
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 7 months ago
- ☆41Updated 9 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Multi-class signal peptide prediction and structure decoding model.☆88Updated 5 months ago
- Neural Networks for Protein Sequence Alignment☆123Updated 8 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆28Updated last year
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆22Updated 2 years ago
- ☆30Updated last year
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆17Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Transmembrane proteins predicted through Language Model embeddings☆37Updated 2 months ago