Elucidating the Utility of Genomic Elements with Neural Nets
☆69Dec 2, 2024Updated last year
Alternatives and similar repositories for EUGENe
Users that are interested in EUGENe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dataloader for applying sequence models to personalized genomics☆28Updated this week
- ☆19Mar 21, 2024Updated 2 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Jul 3, 2025Updated 8 months ago
- ☆25Aug 20, 2024Updated last year
- ☆27Apr 15, 2025Updated 11 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 9 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Apr 1, 2025Updated 11 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- Biological sequence analysis for the modern age.☆264Feb 22, 2026Updated last month
- TF MOtif Discovery from Importance SCOres☆170Feb 20, 2026Updated last month
- surrogate quantitative interpretability for deepnets☆24Aug 11, 2025Updated 7 months ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- ☆11Feb 6, 2023Updated 3 years ago
- ☆47Feb 11, 2026Updated last month
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated 11 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 5 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 2 months ago
- ☆19Oct 21, 2024Updated last year
- a minimal, scriptable genome browser for python☆53Dec 20, 2024Updated last year
- ☆26Sep 9, 2025Updated 6 months ago
- Machine learning methods for DNA sequence analysis.☆60Feb 27, 2026Updated 3 weeks ago
- ☆19Mar 24, 2023Updated 2 years ago
- PyTorch implementation of Basenji2.☆20Apr 29, 2025Updated 10 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆177Updated this week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆97Nov 13, 2025Updated 4 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆58Nov 1, 2025Updated 4 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆58Mar 16, 2026Updated last week
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆31Updated this week
- ☆12Apr 8, 2021Updated 4 years ago
- ☆86Sep 20, 2023Updated 2 years ago
- RNA-seq prediction with deep convolutional neural networks.☆232Aug 28, 2025Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Genomic interval operations on Pandas DataFrames☆191Mar 2, 2026Updated 3 weeks ago