ML4GLand / EUGENeLinks
Elucidating the Utility of Genomic Elements with Neural Nets
☆70Updated last year
Alternatives and similar repositories for EUGENe
Users that are interested in EUGENe are comparing it to the libraries listed below
Sorting:
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 11 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 9 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆86Updated 3 months ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- Machine learning methods for DNA sequence analysis.☆57Updated 4 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆58Updated 7 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆53Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆38Updated 9 months ago
- code to run sei and obtain sei and sequence class predictions☆110Updated 3 years ago
- ☆25Updated last year
- ☆87Updated last month
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 10 months ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- ☆34Updated 11 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- ☆41Updated 6 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 3 months ago
- Annotated sequence data☆11Updated 11 months ago
- A network-based approach for exon set enrichment☆15Updated 5 months ago
- ☆24Updated 4 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- ☆40Updated 6 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆90Updated 2 months ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago