kepbod / maxentpyLinks
Python wrapper for MaxEntScan to calculate splice site strength.
☆17Updated 3 years ago
Alternatives and similar repositories for maxentpy
Users that are interested in maxentpy are comparing it to the libraries listed below
Sorting:
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- ☆39Updated 7 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- ☆53Updated 3 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Updated 3 months ago
- liftover for python, made fast with cython☆96Updated 3 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- Transcription Factor Enrichment Analysis☆36Updated 2 months ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆101Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- Tools for working with BUS files☆102Updated 8 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 3 weeks ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated last year
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- IDR☆30Updated 2 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆48Updated 2 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- ☆51Updated 6 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago