Python wrapper for MaxEntScan to calculate splice site strength.
☆17Jul 8, 2022Updated 3 years ago
Alternatives and similar repositories for maxentpy
Users that are interested in maxentpy are comparing it to the libraries listed below
Sorting:
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Tissue-specific variant effect predictions on splicing☆42May 23, 2023Updated 2 years ago
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 7 years ago
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 4 years ago
- ☆15Jun 3, 2025Updated 9 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18May 25, 2021Updated 4 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 11 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Feb 21, 2022Updated 4 years ago
- ☆24Jul 29, 2025Updated 7 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Aug 13, 2024Updated last year
- Hyper-parameter optimization for Keras☆46Mar 21, 2021Updated 4 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆24Jul 2, 2024Updated last year
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Dec 22, 2020Updated 5 years ago
- ☆27Apr 15, 2025Updated 10 months ago
- Species-aware DNA language models capture regulatory elements and their evolution☆28Aug 21, 2023Updated 2 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Shared Latent Space VAE's☆28Apr 20, 2020Updated 5 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 9 months ago
- Formation continue sur la FAIRisation du code informatique☆10Jun 15, 2022Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 3 years ago
- ☆27Feb 20, 2026Updated last week
- fast webservices based query tool for large sets of genomic features☆25May 10, 2025Updated 9 months ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆31Oct 1, 2021Updated 4 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- ☆32Mar 3, 2024Updated 2 years ago
- Concise: Keras extension for regulatory genomics☆35Dec 26, 2022Updated 3 years ago
- ☆11Oct 10, 2024Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- Designs for 3D printed parts that were developed in the Zhuang Lab.☆11Dec 2, 2020Updated 5 years ago
- A tool that lauches docker jobs on Amazon EC2.☆10May 7, 2019Updated 6 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 2 years ago
- Public repository for ShapeMapper 2 releases☆42Jan 2, 2026Updated 2 months ago
- simple library for dealing with SAM cigar strings☆41Feb 20, 2021Updated 5 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Dec 9, 2021Updated 4 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆39Jul 12, 2025Updated 7 months ago