kepbod / maxentpyLinks
Python wrapper for MaxEntScan to calculate splice site strength.
☆17Updated 3 years ago
Alternatives and similar repositories for maxentpy
Users that are interested in maxentpy are comparing it to the libraries listed below
Sorting:
- ☆40Updated 5 months ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- IDR☆31Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆89Updated last month
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- Extract data quickly from Juicebox via straw☆69Updated 8 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆40Updated last year
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated 11 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 11 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 3 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 10 months ago