kepbod / maxentpyLinks
Python wrapper for MaxEntScan to calculate splice site strength.
☆17Updated 3 years ago
Alternatives and similar repositories for maxentpy
Users that are interested in maxentpy are comparing it to the libraries listed below
Sorting:
- ☆39Updated 6 months ago
- Tissue-specific variant effect predictions on splicing☆43Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- IDR☆30Updated 2 years ago
- liftover for python, made fast with cython☆96Updated 3 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Splits fastq files evenly☆23Updated 5 years ago
- FInding REliable Variants without ArTifacts☆23Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆42Updated 3 months ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 7 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- cfDNA cell type of origin estimation☆34Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- ☆53Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"☆34Updated 9 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆65Updated last week
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago