Oshlack / necklace
Combine reference and assembled transcriptomes for RNA-Seq analysis
☆21Updated 4 years ago
Related projects: ⓘ
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- ☆23Updated 5 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 2 years ago
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Adapters for trimming☆30Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆19Updated 2 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆20Updated 3 weeks ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆20Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆53Updated last week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated this week
- ☆12Updated 3 years ago
- Bayesian reconstruction of ancient DNA fragments☆24Updated last month
- fastq quality assessment and filtering tool☆18Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆38Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Perl scripts for working with the GFF format☆15Updated 13 years ago
- toolkit to process gtf files☆16Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆31Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 3 months ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 5 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 5 years ago
- ☆29Updated 2 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Evolutionary Transcriptomics with R☆38Updated last month