Combine reference and assembled transcriptomes for RNA-Seq analysis
☆24Feb 12, 2020Updated 6 years ago
Alternatives and similar repositories for necklace
Users that are interested in necklace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Mar 22, 2021Updated 5 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- Process SMRT sequencing kinetic summary to predict regional methylation on large genome☆13Dec 4, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Feb 11, 2022Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆42Mar 29, 2016Updated 9 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Mar 10, 2026Updated 2 weeks ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Prion-Like Amino Acid Composition☆18Dec 15, 2025Updated 3 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆99Apr 9, 2023Updated 2 years ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Understand your transcriptome assembly☆102Mar 22, 2024Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- ☆23Nov 9, 2025Updated 4 months ago
- ☆17May 26, 2022Updated 3 years ago
- parallelized blat with multi-threads support☆56Jan 23, 2025Updated last year
- Scripts and documentations on the MCSC decontamination method☆10Jun 13, 2023Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆31Jan 30, 2019Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 5 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 5 years ago
- Docker container for Illumina bcl2fastq☆11Aug 7, 2024Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago