Oshlack / necklaceLinks
Combine reference and assembled transcriptomes for RNA-Seq analysis
☆21Updated 5 years ago
Alternatives and similar repositories for necklace
Users that are interested in necklace are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- This is the Haplotypo repository☆20Updated last year
- Population-wide Deletion Calling☆35Updated 4 months ago
- ☆28Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Multi-sample transcriptome assembly from RNA-Seq☆25Updated 7 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆32Updated 8 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- ☆31Updated 3 years ago
- Hitting associations with k-mers☆45Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago