Oshlack / necklaceLinks
Combine reference and assembled transcriptomes for RNA-Seq analysis
☆22Updated 5 years ago
Alternatives and similar repositories for necklace
Users that are interested in necklace are comparing it to the libraries listed below
Sorting:
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Assembly by Reduced Complexity (ARC)☆42Updated 9 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- ☆28Updated 2 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆36Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Tools for finding mobile element insertions from single-end datasets☆24Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Updated last month
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago