Alternatives and similar repositories for trinotateR:

Users that are interested in trinotateR are comparing it to the libraries listed below

• b-brankovics / grabb
  GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…
  ☆12Updated 4 years ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆23Updated last year
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated 9 months ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 8 years ago
• gengit / PosiGene
  ☆26Updated 3 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• evolbioinfo / booster
  ☆27Updated 4 years ago
• biovcnet / topic-functional-annotation
  A repository for the lessons and notebooks used for Binder tutorials
  ☆13Updated 4 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated last year
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆13Updated 2 years ago
• ThomasArn / genoPlotR_wrapper
  Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…
  ☆14Updated 3 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆18Updated 4 years ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 6 years ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated 7 months ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆38Updated last week
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
  ☆20Updated last year
• veg / hyphy-analyses
  HyPhy standalone analyses
  ☆39Updated this week
• johnssproul / RepeatProfiler
  ☆24Updated 2 weeks ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆17Updated 3 months ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆60Updated 4 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated last year
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated last year
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆30Updated last month
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆35Updated 3 months ago
• balabanmetin / uDance
  ☆43Updated 9 months ago
• PlantDr430 / FunFinder_Pangenome
  Data analysis of Funannotate and Orthofinder outputs to Pangenome results
  ☆19Updated 4 years ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year