Alternatives and similar repositories for santa-sim

Users that are interested in santa-sim are comparing it to the libraries listed below

• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated 2 weeks ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆52Updated 8 years ago
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆80Updated 6 months ago
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆57Updated 3 months ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆72Updated 2 years ago
• niemasd / TreeCluster
  Efficient phylogenetic clustering of viral sequences
  ☆91Updated 2 months ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated 5 months ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆48Updated 2 months ago
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆85Updated 2 years ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 3 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• lskatz / awesome-bioinformatics-education
  resources for bioinformatics education
  ☆101Updated 8 months ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆51Updated 4 years ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆38Updated 3 weeks ago
• W-L / ProblematicSites_SARS-CoV2
  ☆50Updated 3 years ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆57Updated last month
• biocore / unifrac
  ☆41Updated 3 months ago
• ddarriba / modeltest
  Best-fit model selection
  ☆87Updated last year
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆67Updated last year
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆88Updated 3 years ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆72Updated last year
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 3 years ago
• epruesse / SINA
  SINA - Reference based multiple sequence alignment
  ☆41Updated 5 years ago
• evolbioinfo / booster
  ☆28Updated 5 years ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆55Updated 7 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last month
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆31Updated last month
• smirarab / sepp
  Ensemble of HMM methods (SEPP, TIPP, UPP)
  ☆95Updated 5 months ago
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 4 years ago
• lczech / gappa
  A toolkit for analyzing and visualizing phylogenetic placement data
  ☆62Updated 3 months ago