santa-dev / santa-sim
A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.
☆19Updated last year
Alternatives and similar repositories for santa-sim
Users that are interested in santa-sim are comparing it to the libraries listed below
Sorting:
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- ☆28Updated 4 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆47Updated 2 weeks ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆43Updated last year
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆21Updated last year
- Influenza genome analysis Nextflow workflow☆26Updated last month
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆32Updated 2 weeks ago
- Error correction for Illumina RNA-seq reads☆66Updated last year
- Documentation for Evolview☆28Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 4 months ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆23Updated 6 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 9 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆58Updated 8 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆51Updated 3 weeks ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last year
- Bifrost graph gene caller.☆94Updated 7 months ago
- Programmatically interact with the GISAID database.☆75Updated last month
- de novo virus assembler of Illumina paired reads☆55Updated 4 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆48Updated this week
- Python tool to reduce size and redundancy of phylogenetic datasets☆39Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Best-fit model selection☆81Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago