Alternatives and similar repositories for treetime_examples

Users that are interested in treetime_examples are comparing it to the libraries listed below

• rneher / FitnessInference
  Prediction fitness of leaves on a genealogical tree
  ☆11Updated 10 years ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆38Updated last month
• theiagen / public_health_bacterial_genomics
  ☆26Updated last year
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated 2 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 2 years ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆26Updated last month
• artic-network / primer-schemes
  Primer schemes for real-time genome epidemiology
  ☆28Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 2 years ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated 2 months ago
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆47Updated this week
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆45Updated 3 months ago
• balabanmetin / uDance
  ☆43Updated last year
• theiagen / public_health_viral_genomics
  Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…
  ☆41Updated 10 months ago
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆51Updated last month
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆29Updated 11 months ago
• evolbioinfo / booster
  ☆28Updated 5 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆34Updated 3 months ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 3 years ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆27Updated 5 months ago
• marbl / MetaCompass
  MetaCompass: Reference-guided Assembly of Metagenomes
  ☆38Updated 4 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated 3 months ago
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• BeatsonLab-MicrobialGenomics / micropipe
  A pipeline for high-quality bacterial genome construction using ONT sequencing
  ☆39Updated 2 years ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆18Updated 8 months ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• lorrainea / MARS
  MARS: improving Multiple circular sequence Alignment using Refined Sequences
  ☆29Updated last month
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆40Updated last week
• kussell-lab / mcorr
  Inferring bacterial recombination rates from large-scale sequencing datasets.
  ☆42Updated 2 years ago
• adelq / dnds
  Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
  ☆25Updated 7 years ago