neherlab / treetime_examples

Related projects ⓘ

Alternatives and complementary repositories for treetime_examples

• tothuhien / lsd-0.3beta
  ☆12Updated 5 years ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆27Updated 4 months ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆38Updated 3 months ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated 2 weeks ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆29Updated last month
• theiagen / public_health_bacterial_genomics
  ☆27Updated last year
• stajichlab / AAFTF
  Automatic Assembly For The Fungi
  ☆19Updated last year
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆31Updated 3 years ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆27Updated 2 weeks ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆27Updated last year
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 2 years ago
• duchene / phylomad
  ☆19Updated 5 months ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆28Updated 4 months ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 5 years ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated last year
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆30Updated 2 years ago
• dhelekal / CaveDive
  ☆17Updated 5 months ago
• metageni / Scaffold_builder
  Combining de novo and reference-guided assembly with Scaffold_builder
  ☆19Updated 3 years ago
• jonas-fuchs / SARS-CoV-2-analyses
  Collection of R scripts for SARS-CoV-2 (variant) analyses
  ☆12Updated last year
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆26Updated 6 months ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆47Updated last year
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆31Updated 4 months ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆32Updated 2 months ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆17Updated 2 weeks ago
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆15Updated last year
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆34Updated 6 months ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 4 years ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆32Updated last month