☆22Apr 28, 2026Updated last month
Alternatives and similar repositories for wf-flu
Users that are interested in wf-flu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated 2 weeks ago
- VIGOR4☆22Aug 15, 2025Updated 9 months ago
- Repo for PrimerSchemes☆17May 15, 2026Updated 2 weeks ago
- Influenza genome analysis Nextflow workflow☆32Sep 15, 2025Updated 8 months ago
- For all your cluster needs☆18Feb 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆42Feb 26, 2026Updated 3 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 3 weeks ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆11Jan 6, 2023Updated 3 years ago
- Influenza data pipeline to automate genotyping assignment☆42Mar 19, 2026Updated 2 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 7 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Stitch together Nanopore tiled amplicon data without polishing a reference☆17Jan 29, 2024Updated 2 years ago
- ☆10Apr 16, 2025Updated last year
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆74May 14, 2026Updated 2 weeks ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆62May 21, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated 10 months ago
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated last month
- emm Automatic Isolate Labeller☆13Mar 25, 2025Updated last year
- ☆45Mar 13, 2026Updated 2 months ago
- viral-ngs: complete pipelines☆73Updated this week
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 10 months ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 6 months ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Dec 9, 2025Updated 5 months ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆33Mar 9, 2026Updated 2 months ago
- catalog for long-read sequencing tools☆32Feb 14, 2023Updated 3 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- ☆22Feb 12, 2026Updated 3 months ago
- HIVdb webservice client☆12Jan 22, 2026Updated 4 months ago
- ☆14Jun 30, 2021Updated 4 years ago
- FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2☆14Aug 12, 2025Updated 9 months ago