KevinKuchinski / ProbeToolsLinks
Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
â25Updated 2 years ago
Alternatives and similar repositories for ProbeTools
Users that are interested in ProbeTools are comparing it to the libraries listed below
Sorting:
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scaleâ56Updated 2 years ago
- đ§Ź MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsâ35Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF fâŚâ31Updated 3 years ago
- Automatically design multiplex PCR primer pairs for diverse templatesâ30Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequencesâ20Updated 10 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq dataâ25Updated last month
- đś Genome assembly with short sequence readsâ25Updated last year
- Find Unique genomic Regionsâ32Updated 2 months ago
- Python bindings for the TaxonKit libraryâ41Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.â24Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologiesâ35Updated last year
- Trimming tool for Oxford Nanopore sequence dataâ22Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM fileâ25Updated 3 years ago
- An RNA virus strain-level identification tool for short reads.â23Updated last year
- Python3 module for running MUMmer and reading the outputâ33Updated 9 months ago
- OPAL: Open-community Profiling Assessment tooLâ30Updated this week
- Highly sensitive pathogen detectionâ12Updated 5 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomesâ35Updated 4 years ago
- GC Skew Test for Bacterial Genomesâ30Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing dataâ11Updated 7 years ago
- Convert genbank files to a swath of other formatsâ24Updated this week
- Reference-guided multiple sequence alignment of viral genomesâ70Updated 2 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studiesâ32Updated 2 years ago
- Nanopore Real-Time Analysis Toolâ16Updated last year
- finding conserved regions in highly diverse genomesâ15Updated 7 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracksâ57Updated last month
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.â28Updated 8 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sitesâ33Updated 7 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encodingâ23Updated 2 years ago
- Influenza genome analysis Nextflow workflowâ24Updated this week