Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
☆25May 30, 2023Updated 3 years ago
Alternatives and similar repositories for ProbeTools
Users that are interested in ProbeTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow Pipeline for Analysis of NGS-based HIV Drug Resistance Data☆12Mar 2, 2025Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- ☆30Mar 6, 2025Updated last year
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆46Jul 2, 2026Updated 3 months ago
- Variant call verification☆19May 12, 2025Updated last year
- HIVDB Genotypic Resistance Interpretation Program☆23Sep 27, 2026Updated last month
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆27Feb 23, 2026Updated 8 months ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Oct 8, 2026Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- Design tool for highly performant qPCR diagnostics.☆12Updated this week
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Fast viral consensus genome reconstruction☆27Sep 16, 2026Updated last month
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆15Oct 19, 2026Updated last week
- Structured knowledge base of HIV-1/HIV-2.☆11Sep 27, 2026Updated last month
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆58Mar 23, 2026Updated 7 months ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Repo for PrimerSchemes☆22Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated last year
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆27Oct 16, 2026Updated 2 weeks ago
- Multiplex PCR design, in silico☆25Mar 4, 2025Updated last year
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 5 months ago
- Quality control for phylogenetic analyses☆13Oct 19, 2026Updated last week
- A package for designing compact and comprehensive capture probe sets.☆105Jan 25, 2024Updated 2 years ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆13Sep 9, 2021Updated 5 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- Strain-level abundance analysis tool for short-read metagenomics☆12Jul 12, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks☆15Sep 22, 2018Updated 8 years ago
- A Slack bot for LLM/ImageGen responses using an OpenAI API backend (LlamaCPP, Ollama, etc)☆14Oct 7, 2026Updated 3 weeks ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆14Aug 13, 2026Updated 2 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 2 months ago
- ☆16Jan 10, 2023Updated 3 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago