Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
☆25May 30, 2023Updated 3 years ago
Alternatives and similar repositories for ProbeTools
Users that are interested in ProbeTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated 3 months ago
- ☆30Mar 6, 2025Updated last year
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 5 months ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆26Feb 23, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆42Jul 2, 2026Updated 2 weeks ago
- Repo for PrimerSchemes☆18Jul 6, 2026Updated 2 weeks ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆15Jul 8, 2026Updated last week
- HIVDB Genotypic Resistance Interpretation Program☆22Jul 4, 2026Updated 2 weeks ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆54Mar 23, 2026Updated 3 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 9 months ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multiplex PCR design, in silico☆24Mar 4, 2025Updated last year
- Variant call verification☆19May 12, 2025Updated last year
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 2 months ago
- ☆16Jan 10, 2023Updated 3 years ago
- Quality control for phylogenetic analyses☆13Jul 13, 2026Updated last week
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- The ARTIC fieldbioinformatics pipeline☆134Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆22Jun 1, 2026Updated last month
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 8 months ago
- Influenza genome analysis Nextflow workflow☆27Jun 3, 2026Updated last month
- ☆23Mar 27, 2026Updated 3 months ago
- Primalscheme3. Generation of highly multiplex primerschemes☆25Dec 4, 2025Updated 7 months ago
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆18Feb 25, 2026Updated 4 months ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Dec 20, 2025Updated 7 months ago
- Reference-based consensus creation☆61Updated this week
- a tool for designing primer panels for multiplex PCR.☆108Feb 5, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Jun 29, 2023Updated 3 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Mar 5, 2018Updated 8 years ago
- ☆20Jan 13, 2026Updated 6 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 5 years ago
- For all your cluster needs☆18Feb 3, 2023Updated 3 years ago
- Simple Manipulation Of Trees☆14Aug 16, 2025Updated 11 months ago