KevinKuchinski / ProbeToolsLinks
Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
☆25Updated 2 years ago
Alternatives and similar repositories for ProbeTools
Users that are interested in ProbeTools are comparing it to the libraries listed below
Sorting:
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 3 weeks ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated last week
- Find Unique genomic Regions☆32Updated last month
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 9 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 6 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- Nanopore Real-Time Analysis Tool☆16Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆37Updated 3 months ago
- Python3 module for running MUMmer and reading the output☆33Updated 8 months ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated last year
- Main development repository for SpreadGL☆19Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- ☆28Updated 3 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆55Updated 3 months ago
- A python package and a set of shell commands to handle GTF files☆50Updated last year