andersen-lab / avian-influenza
Consensus sequences for U.S. H5N1 clade 2.3.4.4b
☆28Updated this week
Alternatives and similar repositories for avian-influenza:
Users that are interested in avian-influenza are comparing it to the libraries listed below
- ☆16Updated 3 weeks ago
- Utility to alias and dealias pango lineages☆22Updated last year
- ☆21Updated 7 months ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆30Updated 3 weeks ago
- Nextstrain build for avian influenza viruses☆23Updated this week
- ☆24Updated 2 weeks ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆32Updated this week
- SC2 variant detection and composition pipeline☆16Updated last year
- ☆18Updated this week
- Estimating time trees from very large phylogenies☆26Updated 7 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆48Updated 2 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated this week
- Reconstruction of transmission trees using genomic data☆61Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆34Updated last week
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆30Updated this week
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆30Updated 3 weeks ago
- ☆20Updated last week
- Influenza data pipeline to automate genotyping assignment☆25Updated 2 weeks ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 years ago
- UPHL's Reference Free Pipeline☆25Updated 2 weeks ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆60Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- ☆45Updated last month
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆34Updated this week
- Metagenomic Analysis in Real Time☆21Updated this week
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated last year