Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.
☆15Dec 11, 2024Updated last year
Alternatives and similar repositories for octoFLU
Users that are interested in octoFLU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple Manipulation Of Trees☆14Aug 16, 2025Updated 10 months ago
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆15Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆41Mar 31, 2026Updated 2 months ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11Jun 29, 2023Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆42Mar 19, 2026Updated 2 months ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 11 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆12Jan 6, 2023Updated 3 years ago
- µbinfie blog☆19Jul 21, 2025Updated 10 months ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆24Apr 1, 2026Updated 2 months ago
- For all your cluster needs☆18Feb 3, 2023Updated 3 years ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis