flu-crew / octoFLU
Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.
☆10Updated last month
Alternatives and similar repositories for octoFLU:
Users that are interested in octoFLU are comparing it to the libraries listed below
- Simple Manipulation Of Trees☆13Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆32Updated last month
- Explore and analyze biological sequence data☆16Updated 5 months ago
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- A curated database of completed assemblies with taxonomy IDs☆41Updated 3 weeks ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆31Updated this week
- Influenza genome analysis Nextflow workflow☆24Updated 3 weeks ago
- seqfu - Sequece Fastx Utilities☆113Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆34Updated last week
- functions for analyzing phyloseq data☆26Updated 2 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Automatic Assembly For The Fungi☆19Updated last week
- Influenza genome analysis Nextflow workflow☆19Updated last week
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆34Updated last week
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- A phylogeny dating method using least-squares algorithms and criteria☆25Updated 3 months ago
- Manipulate and generate figures for trees in Newick format☆21Updated last week
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Estimating time trees from very large phylogenies☆25Updated 6 months ago
- Read Assembly and Annotation Pipeline Tool☆56Updated 3 months ago
- Influenza data pipeline to automate genotyping assignment☆22Updated 3 months ago
- A set of scripts for calculating pairwise SNP distance☆38Updated 2 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆20Updated 4 months ago
- ☆27Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆50Updated 8 months ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 2 months ago