Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.
☆15Dec 11, 2024Updated last year
Alternatives and similar repositories for octoFLU
Users that are interested in octoFLU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated 7 months ago
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆13Feb 3, 2026Updated last month
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated this week
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆11Jun 29, 2023Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆41Mar 19, 2026Updated last week
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- µbinfie blog☆19Jul 21, 2025Updated 8 months ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆23Mar 18, 2026Updated last week
- For all your cluster needs☆18Feb 3, 2023Updated 3 years ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 10 months ago
- A protein language model for learning the SARS-CoV-2 fitness landscape☆12Apr 22, 2025Updated 11 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- A simple pipeline for bacterial assembly and quality control☆16Mar 20, 2026Updated last week
- Assembly of Nanopore Sequencing☆17Jan 8, 2026Updated 2 months ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Feb 26, 2024Updated 2 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆91Mar 10, 2026Updated 2 weeks ago
- Extend GHC's type checker with user-defined rules, without writing a type checker plugin.☆18Sep 20, 2021Updated 4 years ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Dec 9, 2025Updated 3 months ago
- A page to test short term memory.☆14Sep 29, 2023Updated 2 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 5 months ago
- R package of functions linking R to the threejs 3D plotting engine☆14Jan 28, 2025Updated last year
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last month
- ☆13Mar 28, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- ☆10Dec 22, 2025Updated 3 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆117Mar 12, 2026Updated 2 weeks ago
- phylobayes mpi☆28Feb 3, 2023Updated 3 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 7 years ago
- Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.☆144Mar 13, 2026Updated 2 weeks ago
- Interpretative standards for AMR genotypes☆29Updated this week