Scripts for processing and predicting CRISPR/Cas9-generated mutations
☆29Feb 25, 2023Updated 3 years ago
Alternatives and similar repositories for SelfTarget
Users that are interested in SelfTarget are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆16Jul 17, 2021Updated 5 years ago
- Predictive model for CRISPR-mediated DNA repair outcomes through NHEJ/MMEJ, built with machine learning☆32Nov 8, 2018Updated 7 years ago
- ☆19Jan 26, 2020Updated 6 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆33Aug 13, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80May 21, 2020Updated 6 years ago
- ☆61Sep 27, 2021Updated 4 years ago
- End-to-end guide design for CRISPR/Cas9 with machine learning☆140Jun 12, 2023Updated 3 years ago
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 7 years ago
- C++ package for analysing CRISPR off targets☆21Apr 26, 2021Updated 5 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆25Dec 20, 2024Updated last year
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 3 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆17May 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆242Jul 8, 2020Updated 6 years ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 10 years ago
- Generalizable Cas9/sgRNA prediction models for multiple Cas9 variants☆11May 4, 2026Updated 4 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆41Aug 14, 2026Updated last month
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- CHANGE-seq analysis pipeline☆12Sep 14, 2026Updated last week
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆76Feb 13, 2023Updated 3 years ago
- Code and examples for optical pooled screens (updated protocol).☆15Jan 28, 2024Updated 2 years ago
- ☆13Jan 18, 2017Updated 9 years ago
- Synthego ICE - Inference of CRISPR Editing software☆72Apr 13, 2026Updated 5 months ago
- genomic alignment similarity search tool☆20Jun 26, 2026Updated 2 months ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Feb 23, 2021Updated 5 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆53May 16, 2022Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Software for performing UDiTaS sequencing analysis.☆15Dec 22, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- Unsupervised Clustering and Meta-analysis using Gaussian Mixture Copula Models☆15Aug 25, 2026Updated 3 weeks ago
- List of software/websites/databases/other stuff for genome engineering☆581Jul 29, 2026Updated last month
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 3 years ago
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- Single-sequence protein-RNA complex structure prediction with biological language models☆18Sep 23, 2025Updated 11 months ago