felicityallen / SelfTargetLinks
Scripts for processing and predicting CRISPR/Cas9-generated mutations
☆27Updated 2 years ago
Alternatives and similar repositories for SelfTarget
Users that are interested in SelfTarget are comparing it to the libraries listed below
Sorting:
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- FlashFry: The rapid CRISPR target site characterization tool☆79Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- gatk4 RNA variant calling pipeline☆59Updated 2 weeks ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- A modular Hi-C mapping pipeline☆101Updated last year
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Updated last year
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 4 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆60Updated last year
- ☆39Updated 7 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- ☆26Updated 8 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Updated last year
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 2 months ago
- GEM-Mapper v3☆58Updated 2 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Merging paired-end reads and removing adapters☆46Updated 3 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Extract data quickly from Juicebox via straw☆69Updated 10 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- Software for performing UDiTaS sequencing analysis.☆15Updated 3 years ago
- Ultraperformant reimplementation of SICER☆58Updated 2 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago