Alternatives and similar repositories for DeepCRISPR:

Users that are interested in DeepCRISPR are comparing it to the libraries listed below

• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 2 years ago
• izhangcd / DeepHF
  Core code for the DeepHF prediction tool
  ☆36Updated 5 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆44Updated 5 years ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆17Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆39Updated last year
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆51Updated 4 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆50Updated 9 months ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆47Updated last year
• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated 9 months ago
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆24Updated last year
• ntranoslab / esm-variants
  ☆72Updated last year
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆66Updated this week
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆26Updated 3 weeks ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆94Updated 4 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆55Updated last month
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆97Updated 2 years ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆114Updated 3 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆150Updated 6 months ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆64Updated 7 months ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆88Updated 2 years ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆115Updated 2 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 2 years ago
• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆39Updated 3 years ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆93Updated 3 months ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆69Updated 7 months ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆121Updated 2 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆69Updated 10 months ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆126Updated 3 weeks ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated 11 months ago