bm2-lab / DeepCRISPRLinks
☆70Updated 2 years ago
Alternatives and similar repositories for DeepCRISPR
Users that are interested in DeepCRISPR are comparing it to the libraries listed below
Sorting:
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 11 months ago
- ☆59Updated 4 years ago
- CRISPR Cas9 ontarget prediction software☆28Updated 9 months ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆169Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week
- Peptide-MHC I binding affinity prediction☆224Updated 7 months ago
- Core code for the DeepHF prediction tool☆40Updated 6 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆115Updated 4 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆30Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated last week
- TF MOtif Discovery from Importance SCOres☆161Updated 2 weeks ago
- ☆72Updated last month
- iCodon customizes gene expression based on the codon composition☆15Updated 2 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆55Updated 6 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- ☆34Updated 11 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- ☆50Updated 4 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Updated last year
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆86Updated 3 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆66Updated 8 months ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Code for the CRISPOR article, all data and code to create figures and analysis☆46Updated 9 years ago