bm2-lab / DeepCRISPR

Related projects ⓘ

Alternatives and complementary repositories for DeepCRISPR

• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆25Updated last year
• izhangcd / DeepHF
  Core code for the DeepHF prediction tool
  ☆35Updated 5 years ago
• ntranoslab / esm-variants
  ☆66Updated last year
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆89Updated last month
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 9 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆50Updated 4 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆41Updated 8 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆32Updated 2 years ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 2 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆43Updated 5 years ago
• MedChaabane / DeepBind-with-PyTorch
  CNN architecture for predicting DNA binding sites for Transcription Factors
  ☆48Updated 5 years ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆113Updated 3 years ago
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆24Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆46Updated 6 months ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆121Updated 3 years ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆92Updated last year
• maxwshen / indelphi-dataprocessinganalysis
  Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi
  ☆13Updated last year
• JJAlmagro / subcellular_localization
  ☆56Updated 7 years ago
• gagneurlab / MMSplice_MTSplice
  Tissue-specific variant effect predictions on splicing
  ☆40Updated last year
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆86Updated 2 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 7 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆35Updated last year
• Illumina / PrimateAI-3D
  ☆61Updated 4 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆66Updated 7 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆35Updated 3 weeks ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆47Updated last year
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆58Updated 4 months ago
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆77Updated 2 months ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆45Updated 2 years ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆89Updated 3 weeks ago