editasmedicine / uditasLinks
Software for performing UDiTaS sequencing analysis.
☆14Updated 2 years ago
Alternatives and similar repositories for uditas
Users that are interested in uditas are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- PHAST☆76Updated this week
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 2 weeks ago
- ☆63Updated last month
- Very simple, pure python, BAM file reader