editasmedicine / uditas
Software for performing UDiTaS sequencing analysis.
☆13Updated 2 years ago
Alternatives and similar repositories for uditas:
Users that are interested in uditas are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 weeks ago
- ☆39Updated 10 months ago
- IDR☆31Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Genomic Association Tester☆30Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Modify existing reference fasta and gff3/gtf files to include a new sequence☆30Updated last month
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- Tools for analyzing DNA methylation data☆36Updated last week
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆23Updated 6 years ago
- Software for Quantifying Interspersed Repeat Expression☆53Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last week
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ☆30Updated 6 years ago
- ☆40Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated this week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 9 months ago
- for visual evaluation of read support for structural variation☆51Updated 8 months ago