aaronmck / Cas9FateMappingLinks
Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system
☆25Updated 7 years ago
Alternatives and similar repositories for Cas9FateMapping
Users that are interested in Cas9FateMapping are comparing it to the libraries listed below
Sorting:
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- Core functionality of the CGAT code☆34Updated 3 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- ☆21Updated 8 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ☆38Updated 7 years ago
- ☆16Updated 8 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Cellsnake tool main repo☆35Updated last year
- Data and analysis for the Splatter paper☆29Updated 8 years ago