Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system
☆25Jan 8, 2018Updated 8 years ago
Alternatives and similar repositories for Cas9FateMapping
Users that are interested in Cas9FateMapping are comparing it to the libraries listed below
Sorting:
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 8 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- C++ package for analysing CRISPR off targets☆21Apr 26, 2021Updated 4 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Oct 7, 2022Updated 3 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- CRISPR/Cas9 guide RNA Design☆24Feb 20, 2024Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Nov 17, 2025Updated 3 months ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 8 months ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- Software for creating and comparing genome fingerprints.☆11Jun 30, 2024Updated last year
- ☆10Oct 15, 2025Updated 4 months ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 8 years ago
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Jul 27, 2016Updated 9 years ago
- ☆12Sep 8, 2020Updated 5 years ago
- A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.☆15Jan 21, 2020Updated 6 years ago
- All source code of the crispor.org website☆87Updated this week
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- mreps: software for tandem repeat identification in DNA