aaronmck / Cas9FateMappingView external linksLinks
Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system
☆25Jan 8, 2018Updated 8 years ago
Alternatives and similar repositories for Cas9FateMapping
Users that are interested in Cas9FateMapping are comparing it to the libraries listed below
Sorting:
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 8 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- C++ package for analysing CRISPR off targets☆21Apr 26, 2021Updated 4 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Oct 7, 2022Updated 3 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 5 years ago
- CRISPR/Cas9 guide RNA Design☆24Feb 20, 2024Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆34Nov 17, 2025Updated 2 months ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 8 months ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 8 years ago
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Jul 27, 2016Updated 9 years ago
- A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.☆15Jan 21, 2020Updated 6 years ago
- ☆12Sep 8, 2020Updated 5 years ago
- All source code of the crispor.org website☆87Feb 6, 2026Updated last week
- ☆14Dec 10, 2018Updated 7 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆97Feb 5, 2026Updated last week
- SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.☆15Jul 17, 2021Updated 4 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- Amplicon Sequencing Analysis Pipeline☆18Sep 12, 2025Updated 5 months ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 9 years ago
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Sep 25, 2019Updated 6 years ago
- Code for DNA plasmid editing.☆44Aug 17, 2018Updated 7 years ago
- ConsensusTME Gene Sets and R Script☆39Jun 6, 2024Updated last year
- ☆16Feb 25, 2017Updated 8 years ago
- Browser based application for viewing bam alignments☆56Dec 16, 2016Updated 9 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 11 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year
- Find CNVs in single cell sequencing data.☆18Apr 4, 2023Updated 2 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Nov 18, 2018Updated 7 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Dec 8, 2025Updated 2 months ago