Preprocessing tools for unique molecular index (UMI) sequencing reads
☆31Apr 25, 2023Updated 2 years ago
Alternatives and similar repositories for umi
Users that are interested in umi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipeline for the GUIDE-seq assay.☆81Jun 14, 2023Updated 2 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 3 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- an easy deindex tool for illumina multiple barcodes sequencing☆12Jul 30, 2015Updated 10 years ago
- Scripts to visualize the thumbnail images from illumina sequencing machines☆14Mar 16, 2016Updated 10 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated this week
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆542Mar 2, 2026Updated 3 weeks ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 8 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 9 months ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Apr 15, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated last year
- Tools for working with genomic and high throughput sequencing data.☆360Updated this week
- LoFreq Star: Sensitive variant calling from sequencing data☆111Oct 16, 2025Updated 5 months ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22Mar 10, 2026Updated 2 weeks ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated 2 weeks ago
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Docker for CRISPR Library Designer | https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0915-2☆21May 30, 2022Updated 3 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆28Feb 6, 2025Updated last year
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- ☆71Mar 7, 2019Updated 7 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- Atac-seq QC matrix☆22Jun 4, 2024Updated last year
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆15Feb 5, 2026Updated last month
- Software for performing UDiTaS sequencing analysis.☆15Dec 22, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆97Aug 31, 2022Updated 3 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Nov 27, 2025Updated 3 months ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- A collection of tools to work with Illumina's basespace☆13Apr 10, 2019Updated 6 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆11Mar 30, 2022Updated 3 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year