aryeelab / umiLinks
Preprocessing tools for unique molecular index (UMI) sequencing reads
☆31Updated 2 years ago
Alternatives and similar repositories for umi
Users that are interested in umi are comparing it to the libraries listed below
Sorting:
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Fast fusion detection using kallisto☆80Updated 2 months ago
- Personal diploid genome creation and coordinate conversion☆30Updated 4 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆78Updated 11 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆35Updated 8 years ago
- BigWig and BAM utilities☆97Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago