boutroslab / caRpoolsLinks
Exploratory data analysis for pooled CRISPR/Cas9 screens
☆21Updated 8 years ago
Alternatives and similar repositories for caRpools
Users that are interested in caRpools are comparing it to the libraries listed below
Sorting:
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated last week
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- ☆35Updated 9 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- R package for bcbio single-cell RNA-seq analysis.☆30Updated last year
- Explore the cancer relevance of your gene list☆52Updated last week
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆30Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆78Updated 5 years ago