boutroslab / caRpoolsLinks
Exploratory data analysis for pooled CRISPR/Cas9 screens
☆21Updated 8 years ago
Alternatives and similar repositories for caRpools
Users that are interested in caRpools are comparing it to the libraries listed below
Sorting:
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆35Updated 9 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Use gene expression to predict phenotype sample information☆19Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆33Updated 5 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated this week
- ☆21Updated 8 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆30Updated 3 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 4 months ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Differential Count Data Analysis Toolbox☆61Updated 2 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 8 years ago