boutroslab / caRpoolsLinks
Exploratory data analysis for pooled CRISPR/Cas9 screens
☆21Updated 8 years ago
Alternatives and similar repositories for caRpools
Users that are interested in caRpools are comparing it to the libraries listed below
Sorting:
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆29Updated 6 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 9 months ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆25Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Use gene expression to predict phenotype sample information☆19Updated 7 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- ☆19Updated 8 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago